miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6961 3' -51.4 NC_001875.2 + 69406 1.11 0.004645
Target:  5'- uUUACGUUGGGCGCGCAAUUUCCACGCg -3'
miRNA:   3'- -AAUGCAACCCGCGCGUUAAAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 57772 0.85 0.209102
Target:  5'- uUUGCGagGGGCGCGCAcaaUCCACGCc -3'
miRNA:   3'- -AAUGCaaCCCGCGCGUuaaAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 91455 0.85 0.21459
Target:  5'- -gGCGcgUGGGCGCGCAuguccaccgAUUUCCugGCg -3'
miRNA:   3'- aaUGCa-ACCCGCGCGU---------UAAAGGugCG- -5'
6961 3' -51.4 NC_001875.2 + 83471 0.8 0.377093
Target:  5'- -cGCGUcggacGGGCGCGCGAUUagCGCGCu -3'
miRNA:   3'- aaUGCAa----CCCGCGCGUUAAagGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 100141 0.78 0.47953
Target:  5'- aUGCGccgGcGGCGCGCAAgcggcggUCCACGCc -3'
miRNA:   3'- aAUGCaa-C-CCGCGCGUUaa-----AGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 1053 0.77 0.519023
Target:  5'- -aGCGUUGGGCGCaacguugGCGA---CCGCGCg -3'
miRNA:   3'- aaUGCAACCCGCG-------CGUUaaaGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 79859 0.77 0.530398
Target:  5'- -aAUGUUGGGgugGCGCGuggUCCACGCg -3'
miRNA:   3'- aaUGCAACCCg--CGCGUuaaAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 123360 0.76 0.572453
Target:  5'- -gGCGcccGGCGUGguGUUUCCGCGCg -3'
miRNA:   3'- aaUGCaacCCGCGCguUAAAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 80616 0.76 0.583102
Target:  5'- -cACGgUGGGCGCGCGGaa--CGCGCg -3'
miRNA:   3'- aaUGCaACCCGCGCGUUaaagGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 93674 0.76 0.59379
Target:  5'- cUGCGUcGGGCGCuCGcgUUCaCGCGCa -3'
miRNA:   3'- aAUGCAaCCCGCGcGUuaAAG-GUGCG- -5'
6961 3' -51.4 NC_001875.2 + 96233 0.76 0.600217
Target:  5'- -gGCGUUGGGCGCGUucagggaACGCa -3'
miRNA:   3'- aaUGCAACCCGCGCGuuaaaggUGCG- -5'
6961 3' -51.4 NC_001875.2 + 26892 0.76 0.604508
Target:  5'- aUAUGUUGGGCguuacGCGCGcgUUCUgcugGCGCa -3'
miRNA:   3'- aAUGCAACCCG-----CGCGUuaAAGG----UGCG- -5'
6961 3' -51.4 NC_001875.2 + 125367 0.75 0.616324
Target:  5'- -cGCGUUGGGCGCcGUAAUcgaccugacgaacaCCGCGCg -3'
miRNA:   3'- aaUGCAACCCGCG-CGUUAaa------------GGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 23818 0.75 0.647522
Target:  5'- -gGCGUcGGGCGCGCcGUgUCuCugGCg -3'
miRNA:   3'- aaUGCAaCCCGCGCGuUAaAG-GugCG- -5'
6961 3' -51.4 NC_001875.2 + 13364 0.75 0.658265
Target:  5'- --cCGUUGaagcuGGUGCGCAccGUUUCUACGCa -3'
miRNA:   3'- aauGCAAC-----CCGCGCGU--UAAAGGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 72083 0.75 0.658265
Target:  5'- --uCGUUGGGCGcCGUggUUU-CGCGCa -3'
miRNA:   3'- aauGCAACCCGC-GCGuuAAAgGUGCG- -5'
6961 3' -51.4 NC_001875.2 + 102510 0.74 0.679671
Target:  5'- -aGCGgUGGGCGcCGCAGUgUCCguuuguGCGCa -3'
miRNA:   3'- aaUGCaACCCGC-GCGUUAaAGG------UGCG- -5'
6961 3' -51.4 NC_001875.2 + 42698 0.74 0.679671
Target:  5'- -cGCGc--GGCGCGCGGUUUCgUACGCa -3'
miRNA:   3'- aaUGCaacCCGCGCGUUAAAG-GUGCG- -5'
6961 3' -51.4 NC_001875.2 + 23005 0.73 0.721882
Target:  5'- -cGCGUuuUGGGCGCGCAccgugUUCaGCGUg -3'
miRNA:   3'- aaUGCA--ACCCGCGCGUua---AAGgUGCG- -5'
6961 3' -51.4 NC_001875.2 + 39930 0.73 0.721882
Target:  5'- -aGCGgccuGCGCGCAAUUUgCGCGCg -3'
miRNA:   3'- aaUGCaaccCGCGCGUUAAAgGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.