miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6962 5' -56.3 NC_001875.2 + 51207 0.66 0.886566
Target:  5'- uCUGGCGCCG-CCCGU---CGAGcGCg -3'
miRNA:   3'- cGGUCGCGGCuGGGCGaaaGCUCuUG- -5'
6962 5' -56.3 NC_001875.2 + 83106 0.66 0.886566
Target:  5'- uGCUAcuGUGCUGGCCCGCg--CGGaugcucucGAACg -3'
miRNA:   3'- -CGGU--CGCGGCUGGGCGaaaGCU--------CUUG- -5'
6962 5' -56.3 NC_001875.2 + 111707 0.66 0.886566
Target:  5'- uCCAGCGCUGGaaauuCCCGCcgacgugCGcGAACa -3'
miRNA:   3'- cGGUCGCGGCU-----GGGCGaaa----GCuCUUG- -5'
6962 5' -56.3 NC_001875.2 + 128014 0.66 0.879543
Target:  5'- gGCC-GCGCCGGCgUGCgc-CGAcGACg -3'
miRNA:   3'- -CGGuCGCGGCUGgGCGaaaGCUcUUG- -5'
6962 5' -56.3 NC_001875.2 + 1826 0.66 0.879543
Target:  5'- cGUCAGCaaCGACCCuGCuUUUCGGguguGAACg -3'
miRNA:   3'- -CGGUCGcgGCUGGG-CG-AAAGCU----CUUG- -5'
6962 5' -56.3 NC_001875.2 + 56574 0.66 0.879543
Target:  5'- cGCCAuCGCCGACgCCGCcgccaUCGccGACg -3'
miRNA:   3'- -CGGUcGCGGCUG-GGCGaa---AGCucUUG- -5'
6962 5' -56.3 NC_001875.2 + 65537 0.66 0.879543
Target:  5'- cGCCAucaacuCGCCGGCCgCGCaUUUGAcgcaGAGCg -3'
miRNA:   3'- -CGGUc-----GCGGCUGG-GCGaAAGCU----CUUG- -5'
6962 5' -56.3 NC_001875.2 + 88526 0.66 0.879543
Target:  5'- aCCA-CGCCGACCCGCg--CGcGcGCc -3'
miRNA:   3'- cGGUcGCGGCUGGGCGaaaGCuCuUG- -5'
6962 5' -56.3 NC_001875.2 + 130092 0.66 0.879543
Target:  5'- gGUCGcCGCUGAggcaCCGCUagcacacgccgUUCGAGAGCg -3'
miRNA:   3'- -CGGUcGCGGCUg---GGCGA-----------AAGCUCUUG- -5'
6962 5' -56.3 NC_001875.2 + 80646 0.66 0.879543
Target:  5'- gGgCGGCGCCaGAaCCGCgccgUCGuGGGCa -3'
miRNA:   3'- -CgGUCGCGG-CUgGGCGaa--AGCuCUUG- -5'
6962 5' -56.3 NC_001875.2 + 102049 0.66 0.872296
Target:  5'- cGCCAGCGCCcgcacaguCCCGCacgaucaUUUGGGGcgaGCa -3'
miRNA:   3'- -CGGUCGCGGcu------GGGCGa------AAGCUCU---UG- -5'
6962 5' -56.3 NC_001875.2 + 37987 0.66 0.872296
Target:  5'- cGCuCAGCGCCGACaaCCGUUggugcauuaCGGGcACg -3'
miRNA:   3'- -CG-GUCGCGGCUG--GGCGAaa-------GCUCuUG- -5'
6962 5' -56.3 NC_001875.2 + 49875 0.66 0.872296
Target:  5'- uGCCGGCGCCaACCaaGUggUCGucGAGCu -3'
miRNA:   3'- -CGGUCGCGGcUGGg-CGaaAGCu-CUUG- -5'
6962 5' -56.3 NC_001875.2 + 131402 0.66 0.872296
Target:  5'- cGCCGGUGCaCGACggcaCGC--UCGAGuACu -3'
miRNA:   3'- -CGGUCGCG-GCUGg---GCGaaAGCUCuUG- -5'
6962 5' -56.3 NC_001875.2 + 16916 0.66 0.872296
Target:  5'- -aCGGCGCgGGCCuCGUgUUUGAGcGCa -3'
miRNA:   3'- cgGUCGCGgCUGG-GCGaAAGCUCuUG- -5'
6962 5' -56.3 NC_001875.2 + 2942 0.66 0.872296
Target:  5'- aCCGcGCGCUGGCgCGCUUgcUCGGcAGCg -3'
miRNA:   3'- cGGU-CGCGGCUGgGCGAA--AGCUcUUG- -5'
6962 5' -56.3 NC_001875.2 + 98366 0.66 0.864832
Target:  5'- cCCAGCGCgCGGCgCGCcacUUUCGAccACu -3'
miRNA:   3'- cGGUCGCG-GCUGgGCG---AAAGCUcuUG- -5'
6962 5' -56.3 NC_001875.2 + 3103 0.66 0.857156
Target:  5'- cGCCGGgGCgCGGCUCGCgg-CGcAGAc- -3'
miRNA:   3'- -CGGUCgCG-GCUGGGCGaaaGC-UCUug -5'
6962 5' -56.3 NC_001875.2 + 66127 0.66 0.857156
Target:  5'- aGgCGGCGCCG-CCCGC-----GGAACa -3'
miRNA:   3'- -CgGUCGCGGCuGGGCGaaagcUCUUG- -5'
6962 5' -56.3 NC_001875.2 + 99430 0.66 0.857156
Target:  5'- gGCCAGCGCCGcgauuAUuaGCgugaUGAGAACc -3'
miRNA:   3'- -CGGUCGCGGC-----UGggCGaaa-GCUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.