miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6971 3' -62.3 NC_001875.2 + 124679 0.66 0.592236
Target:  5'- --cGCGUccaGCGCaaagauguuggcccuUCGgCCAACGCGCCu -3'
miRNA:   3'- uucCGCA---CGCG---------------AGCgGGUUGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 82253 0.66 0.588261
Target:  5'- -uGGUGguaGCGCUCG-UCGGCGCGCa- -3'
miRNA:   3'- uuCCGCa--CGCGAGCgGGUUGCGCGgc -5'
6971 3' -62.3 NC_001875.2 + 10883 0.66 0.588261
Target:  5'- -cGGUG-GCGCUgcCGCgCAACGUGuuGg -3'
miRNA:   3'- uuCCGCaCGCGA--GCGgGUUGCGCggC- -5'
6971 3' -62.3 NC_001875.2 + 63949 0.66 0.588261
Target:  5'- cGAGGaagGCGCugUCGCCgAcCGCGCUGa -3'
miRNA:   3'- -UUCCgcaCGCG--AGCGGgUuGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 76499 0.66 0.588261
Target:  5'- cGAGGCG-GCGC-C-CCCGaagcgGCGCGUCa -3'
miRNA:   3'- -UUCCGCaCGCGaGcGGGU-----UGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 114549 0.66 0.585283
Target:  5'- -cGGCG-GCGCUcacgaCGCuCCAgugcggcggauuguGCGCGUCGg -3'
miRNA:   3'- uuCCGCaCGCGA-----GCG-GGU--------------UGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 66762 0.66 0.578345
Target:  5'- uGAGcGCGU-C-CUUGCCCAGCGUGuuGg -3'
miRNA:   3'- -UUC-CGCAcGcGAGCGGGUUGCGCggC- -5'
6971 3' -62.3 NC_001875.2 + 33788 0.66 0.578345
Target:  5'- cGGGGUGgucuagGCGCacUUGCCCGucggcgcacgGCGCGCgGg -3'
miRNA:   3'- -UUCCGCa-----CGCG--AGCGGGU----------UGCGCGgC- -5'
6971 3' -62.3 NC_001875.2 + 89777 0.66 0.578345
Target:  5'- -cGGCGacGCGCUCGUgC-ACGUGCgCGa -3'
miRNA:   3'- uuCCGCa-CGCGAGCGgGuUGCGCG-GC- -5'
6971 3' -62.3 NC_001875.2 + 48875 0.66 0.578345
Target:  5'- cGAGGgGU-CGgUCGCCgagGACGCGCCc -3'
miRNA:   3'- -UUCCgCAcGCgAGCGGg--UUGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 69196 0.66 0.578345
Target:  5'- --cGCGUGCGCg-GCgCCGACG-GCCa -3'
miRNA:   3'- uucCGCACGCGagCG-GGUUGCgCGGc -5'
6971 3' -62.3 NC_001875.2 + 7104 0.66 0.578345
Target:  5'- --aGCGcGCGCUgGCCgAcauugaccgccACGCGCCGc -3'
miRNA:   3'- uucCGCaCGCGAgCGGgU-----------UGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 69230 0.66 0.578345
Target:  5'- cGGGCGacgcGCGCUgugccgacuUGCCCGacggcACGgGCCGg -3'
miRNA:   3'- uUCCGCa---CGCGA---------GCGGGU-----UGCgCGGC- -5'
6971 3' -62.3 NC_001875.2 + 38166 0.66 0.568467
Target:  5'- --cGCGUGaaCGCgagCGCCCGACGCagGUCGu -3'
miRNA:   3'- uucCGCAC--GCGa--GCGGGUUGCG--CGGC- -5'
6971 3' -62.3 NC_001875.2 + 18703 0.66 0.568467
Target:  5'- -cGGCGUGCacauuaacguGC-CGCacaacaaCAGCGCGCCc -3'
miRNA:   3'- uuCCGCACG----------CGaGCGg------GUUGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 44005 0.66 0.568467
Target:  5'- -cGaCGgGCGCcgUGCCCAGCGUGCUGu -3'
miRNA:   3'- uuCcGCaCGCGa-GCGGGUUGCGCGGC- -5'
6971 3' -62.3 NC_001875.2 + 122131 0.66 0.568467
Target:  5'- cGGGCGcgGCGC--GgCCGGCGCGCaCGa -3'
miRNA:   3'- uUCCGCa-CGCGagCgGGUUGCGCG-GC- -5'
6971 3' -62.3 NC_001875.2 + 115758 0.66 0.568467
Target:  5'- -cGGCGUGCGCcaaaccggCGCCguGUGCGUCc -3'
miRNA:   3'- uuCCGCACGCGa-------GCGGguUGCGCGGc -5'
6971 3' -62.3 NC_001875.2 + 122693 0.66 0.568467
Target:  5'- -uGGCGUGCGC-CGUggacaccgaaCUGGCGCGCg- -3'
miRNA:   3'- uuCCGCACGCGaGCG----------GGUUGCGCGgc -5'
6971 3' -62.3 NC_001875.2 + 13878 0.66 0.568467
Target:  5'- cAGGCcauuuugGCGCUCGCUgCAACGgGUCa -3'
miRNA:   3'- uUCCGca-----CGCGAGCGG-GUUGCgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.