miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6971 5' -56.3 NC_001875.2 + 20494 0.66 0.890442
Target:  5'- uAGCGAUGUGACaaauaugugugauugCGU-GCGCGCaaaacaGCGACg -3'
miRNA:   3'- -UUGCUGCACUG---------------GCAgUGCGCG------UGCUG- -5'
6971 5' -56.3 NC_001875.2 + 31538 0.66 0.889763
Target:  5'- cAGCGACGcgcucauUGugUauuguuugcgcgaagGUCGCGUGCACGAg -3'
miRNA:   3'- -UUGCUGC-------ACugG---------------CAGUGCGCGUGCUg -5'
6971 5' -56.3 NC_001875.2 + 100233 0.66 0.887713
Target:  5'- cGCGcAUGUGGuCCGccCACG-GCACGGCg -3'
miRNA:   3'- uUGC-UGCACU-GGCa-GUGCgCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 119891 0.66 0.887713
Target:  5'- cAACG-CGccGCCgGUCGCGCGCAcaguCGGCg -3'
miRNA:   3'- -UUGCuGCacUGG-CAGUGCGCGU----GCUG- -5'
6971 5' -56.3 NC_001875.2 + 54959 0.66 0.887713
Target:  5'- cGCGcGCGUuugccgGACgCGUCGCucGCGCugGGCg -3'
miRNA:   3'- uUGC-UGCA------CUG-GCAGUG--CGCGugCUG- -5'
6971 5' -56.3 NC_001875.2 + 50357 0.66 0.880732
Target:  5'- -uUGGCGUcgGGCCG-CGCGCGcCACuGACc -3'
miRNA:   3'- uuGCUGCA--CUGGCaGUGCGC-GUG-CUG- -5'
6971 5' -56.3 NC_001875.2 + 52739 0.66 0.880732
Target:  5'- cAACGcCGUGGCCaaguuUUAUGCGCACuACg -3'
miRNA:   3'- -UUGCuGCACUGGc----AGUGCGCGUGcUG- -5'
6971 5' -56.3 NC_001875.2 + 49466 0.66 0.880732
Target:  5'- cGGCGcCGUGGuuCCG-CGCGCGCcCGAg -3'
miRNA:   3'- -UUGCuGCACU--GGCaGUGCGCGuGCUg -5'
6971 5' -56.3 NC_001875.2 + 109023 0.66 0.880732
Target:  5'- -cCGACGguGCCGUCggAC-CGCACGGCc -3'
miRNA:   3'- uuGCUGCacUGGCAG--UGcGCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 41236 0.66 0.880732
Target:  5'- cACGGCcucGGCCGUCGCGUGCuACa-- -3'
miRNA:   3'- uUGCUGca-CUGGCAGUGCGCG-UGcug -5'
6971 5' -56.3 NC_001875.2 + 69460 0.66 0.880021
Target:  5'- cGGCGACucagcauGUcGACCuccCugGCGCGCGACc -3'
miRNA:   3'- -UUGCUG-------CA-CUGGca-GugCGCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 65435 0.66 0.873528
Target:  5'- -cCGGCGUGcACCG-CugGCGguCGGu -3'
miRNA:   3'- uuGCUGCAC-UGGCaGugCGCguGCUg -5'
6971 5' -56.3 NC_001875.2 + 119055 0.66 0.873528
Target:  5'- -cCGGCGUG--CG-CAUGUGCGCGGCg -3'
miRNA:   3'- uuGCUGCACugGCaGUGCGCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 111811 0.66 0.873528
Target:  5'- cGACGGCGccUGGCUGcUC-CGCGUgACGGCu -3'
miRNA:   3'- -UUGCUGC--ACUGGC-AGuGCGCG-UGCUG- -5'
6971 5' -56.3 NC_001875.2 + 98565 0.66 0.873528
Target:  5'- -uUGugGUGugCGUCAaGgGCgACGGCu -3'
miRNA:   3'- uuGCugCACugGCAGUgCgCG-UGCUG- -5'
6971 5' -56.3 NC_001875.2 + 33089 0.66 0.873528
Target:  5'- uGAUGGCGgcGCCGUCGCGgcugaGCACGcACc -3'
miRNA:   3'- -UUGCUGCacUGGCAGUGCg----CGUGC-UG- -5'
6971 5' -56.3 NC_001875.2 + 81905 0.66 0.873528
Target:  5'- cGACGACca-GCUGauuaGCGCGCGCGGCu -3'
miRNA:   3'- -UUGCUGcacUGGCag--UGCGCGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 68560 0.66 0.866105
Target:  5'- cGCGGCGgcGGCgGUCGCGCaccGCGUGGCg -3'
miRNA:   3'- uUGCUGCa-CUGgCAGUGCG---CGUGCUG- -5'
6971 5' -56.3 NC_001875.2 + 130117 0.66 0.866105
Target:  5'- cGGCGGCGcGACCGgugUCGCGCcCGCaGCa -3'
miRNA:   3'- -UUGCUGCaCUGGC---AGUGCGcGUGcUG- -5'
6971 5' -56.3 NC_001875.2 + 117966 0.66 0.866105
Target:  5'- cAGCGAgCGccaaaaUGGCCuGUUGCGCGCGCG-Ca -3'
miRNA:   3'- -UUGCU-GC------ACUGG-CAGUGCGCGUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.