miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 85151 1.11 0.002602
Target:  5'- aCGUCGCGCACCUUGAACUCGCUCGACg -3'
miRNA:   3'- -GCAGCGCGUGGAACUUGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 59096 0.75 0.493561
Target:  5'- gCGUUggaGCGCACCUUGGGC-CGCUaCGAg -3'
miRNA:   3'- -GCAG---CGCGUGGAACUUGaGCGA-GCUg -5'
6977 3' -54.5 NC_001875.2 + 56054 0.74 0.553367
Target:  5'- uGUCGCgGCACUuuUUGAGCUCGCUgCGuuGCu -3'
miRNA:   3'- gCAGCG-CGUGG--AACUUGAGCGA-GC--UG- -5'
6977 3' -54.5 NC_001875.2 + 54882 0.73 0.594422
Target:  5'- -uUCGCGCAC--UGGGCUCGCaCGGCg -3'
miRNA:   3'- gcAGCGCGUGgaACUUGAGCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 96418 0.72 0.646316
Target:  5'- aGUCGCGCGCa---AACUCGCgcuugUCGGCg -3'
miRNA:   3'- gCAGCGCGUGgaacUUGAGCG-----AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 99734 0.72 0.646316
Target:  5'- aGU-GCGCGCCUUGucguGCUCGUgcugUGACg -3'
miRNA:   3'- gCAgCGCGUGGAACu---UGAGCGa---GCUG- -5'
6977 3' -54.5 NC_001875.2 + 50845 0.72 0.650469
Target:  5'- gCGUCGCGCGCCUuuuucagcagcagcuUuuGCUCGggCGGCg -3'
miRNA:   3'- -GCAGCGCGUGGA---------------AcuUGAGCgaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 2943 0.72 0.656694
Target:  5'- --cCGCGCGCUggcGcGCUUGCUCGGCa -3'
miRNA:   3'- gcaGCGCGUGGaa-CuUGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 33856 0.72 0.677379
Target:  5'- aCGUCGCGCACCgUGcGCg-GC-CGGCa -3'
miRNA:   3'- -GCAGCGCGUGGaACuUGagCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 42735 0.72 0.67841
Target:  5'- uCGUCGCGCGCggcgacgcgcauggUGAGCggcgCGCUCGGg -3'
miRNA:   3'- -GCAGCGCGUGga------------ACUUGa---GCGAGCUg -5'
6977 3' -54.5 NC_001875.2 + 54003 0.71 0.708096
Target:  5'- gGUCGCGCacgGCCUUGGcgGCgcgCGCguacCGGCa -3'
miRNA:   3'- gCAGCGCG---UGGAACU--UGa--GCGa---GCUG- -5'
6977 3' -54.5 NC_001875.2 + 80612 0.71 0.727258
Target:  5'- uCGUCacgguggGCGCGCg--GAACgcgCGCUCGACg -3'
miRNA:   3'- -GCAG-------CGCGUGgaaCUUGa--GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 71924 0.71 0.728258
Target:  5'- gCGUCGgcgaGCGCCUUGAccGCgCGCUCcGCg -3'
miRNA:   3'- -GCAGCg---CGUGGAACU--UGaGCGAGcUG- -5'
6977 3' -54.5 NC_001875.2 + 39769 0.71 0.738216
Target:  5'- --aCGCGCGCCUgGAACgccgaaaccgUGUUCGACa -3'
miRNA:   3'- gcaGCGCGUGGAaCUUGa---------GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 68572 0.7 0.757835
Target:  5'- gGUCGCGCACCgcgUGGcGC-CGCUggccgccgagccCGACg -3'
miRNA:   3'- gCAGCGCGUGGa--ACU-UGaGCGA------------GCUG- -5'
6977 3' -54.5 NC_001875.2 + 24006 0.69 0.795623
Target:  5'- gCGUCgcaagGCGCACCggGcGCggGCUCGGCg -3'
miRNA:   3'- -GCAG-----CGCGUGGaaCuUGagCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 120850 0.69 0.804712
Target:  5'- --aCGCGCGCCUgcAGCgcuucgUCGCUUGACu -3'
miRNA:   3'- gcaGCGCGUGGAacUUG------AGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 21898 0.69 0.8224
Target:  5'- aCGUCGCGCugCUccgcggUGAGCggCGCgugcaUGGCu -3'
miRNA:   3'- -GCAGCGCGugGA------ACUUGa-GCGa----GCUG- -5'
6977 3' -54.5 NC_001875.2 + 91207 0.69 0.83098
Target:  5'- gCGU-GCGCGCCcagUUGAGCUUGUuguacaggcugUCGACu -3'
miRNA:   3'- -GCAgCGCGUGG---AACUUGAGCG-----------AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 91123 0.68 0.839374
Target:  5'- gCGUCuGCGCGuCCUUGAcguacugcagGCUUGCgCGAUu -3'
miRNA:   3'- -GCAG-CGCGU-GGAACU----------UGAGCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.