miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 3' -54.5 NC_001875.2 + 448 0.68 0.878288
Target:  5'- cCGUCGUGCACCggcgagUGuucgCGCUUGcACa -3'
miRNA:   3'- -GCAGCGCGUGGa-----ACuugaGCGAGC-UG- -5'
6977 3' -54.5 NC_001875.2 + 495 0.66 0.919819
Target:  5'- aCGUUGUGCGCCUguuuuuggcgcuccaUGGACUCuugcaaauCUCGAg -3'
miRNA:   3'- -GCAGCGCGUGGA---------------ACUUGAGc-------GAGCUg -5'
6977 3' -54.5 NC_001875.2 + 762 0.66 0.933848
Target:  5'- -aUCGUGCACgUUGAuUUCG-UCGGCg -3'
miRNA:   3'- gcAGCGCGUGgAACUuGAGCgAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 2295 0.68 0.839374
Target:  5'- gCG-CGCGCGCCgUGGccgcGCgcaGCUCGGCc -3'
miRNA:   3'- -GCaGCGCGUGGaACU----UGag-CGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 2421 0.67 0.898974
Target:  5'- uGUCGCGCACCgu--GCUCauggugcuuaGCUCcACg -3'
miRNA:   3'- gCAGCGCGUGGaacuUGAG----------CGAGcUG- -5'
6977 3' -54.5 NC_001875.2 + 2943 0.72 0.656694
Target:  5'- --cCGCGCGCUggcGcGCUUGCUCGGCa -3'
miRNA:   3'- gcaGCGCGUGGaa-CuUGAGCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 5076 0.67 0.904765
Target:  5'- uCGUCGCGCacgucgaccACCUaaugGGGCUgCGCgcgcuaaUCGACg -3'
miRNA:   3'- -GCAGCGCG---------UGGAa---CUUGA-GCG-------AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 6972 0.66 0.928649
Target:  5'- aCGgCGCGCugCUUGAcaGCgggcaucuUUGCuUCGACg -3'
miRNA:   3'- -GCaGCGCGugGAACU--UG--------AGCG-AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 11080 0.67 0.892312
Target:  5'- gCGUggCGCGCGCCcUGGACacggccgcCGuCUCGGCg -3'
miRNA:   3'- -GCA--GCGCGUGGaACUUGa-------GC-GAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 16293 0.67 0.911577
Target:  5'- aCGUCcauGUGCGCCagcauugUGGACggGUUCGACa -3'
miRNA:   3'- -GCAG---CGCGUGGa------ACUUGagCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 19773 0.66 0.9388
Target:  5'- uGUCuGCGCACCUgcUGGAagacgaCGCggcCGACg -3'
miRNA:   3'- gCAG-CGCGUGGA--ACUUga----GCGa--GCUG- -5'
6977 3' -54.5 NC_001875.2 + 21898 0.69 0.8224
Target:  5'- aCGUCGCGCugCUccgcggUGAGCggCGCgugcaUGGCu -3'
miRNA:   3'- -GCAGCGCGugGA------ACUUGa-GCGa----GCUG- -5'
6977 3' -54.5 NC_001875.2 + 24006 0.69 0.795623
Target:  5'- gCGUCgcaagGCGCACCggGcGCggGCUCGGCg -3'
miRNA:   3'- -GCAG-----CGCGUGGaaCuUGagCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 30463 0.68 0.86336
Target:  5'- gCGUUGCGCGCgUUUGcAACUUGUaaaagaacUCGGCg -3'
miRNA:   3'- -GCAGCGCGUG-GAAC-UUGAGCG--------AGCUG- -5'
6977 3' -54.5 NC_001875.2 + 33856 0.72 0.677379
Target:  5'- aCGUCGCGCACCgUGcGCg-GC-CGGCa -3'
miRNA:   3'- -GCAGCGCGUGGaACuUGagCGaGCUG- -5'
6977 3' -54.5 NC_001875.2 + 36660 0.67 0.905396
Target:  5'- gCGUCGUGCGCgcUGAGCUCGg--GGCg -3'
miRNA:   3'- -GCAGCGCGUGgaACUUGAGCgagCUG- -5'
6977 3' -54.5 NC_001875.2 + 38459 0.67 0.892312
Target:  5'- cCGgCGCGCGCUagaaUUGGugcaGCgcgUGCUCGACa -3'
miRNA:   3'- -GCaGCGCGUGG----AACU----UGa--GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 39769 0.71 0.738216
Target:  5'- --aCGCGCGCCUgGAACgccgaaaccgUGUUCGACa -3'
miRNA:   3'- gcaGCGCGUGGAaCUUGa---------GCGAGCUG- -5'
6977 3' -54.5 NC_001875.2 + 41003 0.66 0.933848
Target:  5'- aCGUCGCGCACCUaaAGCaggUCGCcaaccgcgUGGCc -3'
miRNA:   3'- -GCAGCGCGUGGAacUUG---AGCGa-------GCUG- -5'
6977 3' -54.5 NC_001875.2 + 41123 0.66 0.943508
Target:  5'- aCGUCGUGuCGCgCUUGAccgGCggccgCGC-CGGCa -3'
miRNA:   3'- -GCAGCGC-GUG-GAACU---UGa----GCGaGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.