miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 5' -60.1 NC_001875.2 + 3169 0.67 0.668917
Target:  5'- -gGCgaguaGGUGAGCCGGCGG-CCGCg- -3'
miRNA:   3'- caUGac---CUACUCGGCUGCCcGGCGgc -5'
6977 5' -60.1 NC_001875.2 + 9552 0.67 0.648905
Target:  5'- -gGCUGG-UGAGCgGAuaUGaGGCCgGCCGa -3'
miRNA:   3'- caUGACCuACUCGgCU--GC-CCGG-CGGC- -5'
6977 5' -60.1 NC_001875.2 + 17664 0.67 0.635866
Target:  5'- -cGCUGGcgGugaagcuggcguuuAGCCGACGcGGCUGCg- -3'
miRNA:   3'- caUGACCuaC--------------UCGGCUGC-CCGGCGgc -5'
6977 5' -60.1 NC_001875.2 + 23327 0.68 0.608788
Target:  5'- uUGCUGGGcggaaagGAGCaCGACGGcggguuGCaCGCCGg -3'
miRNA:   3'- cAUGACCUa------CUCG-GCUGCC------CG-GCGGC- -5'
6977 5' -60.1 NC_001875.2 + 29918 0.67 0.628842
Target:  5'- cUGCUGGAcacGuuGACaagGGGCCGCCc -3'
miRNA:   3'- cAUGACCUacuCggCUG---CCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 31674 0.7 0.482279
Target:  5'- -gACUGGGccagcGuGCCGGCGuGGaCCGCCGc -3'
miRNA:   3'- caUGACCUa----CuCGGCUGC-CC-GGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 35884 0.68 0.598783
Target:  5'- ---aUGGAauUGAGCCGGCGcGuuGCCa -3'
miRNA:   3'- caugACCU--ACUCGGCUGCcCggCGGc -5'
6977 5' -60.1 NC_001875.2 + 37102 0.66 0.718298
Target:  5'- -cGCgUGGGUGuGCgGGCGcGGCgccgCGCCGg -3'
miRNA:   3'- caUG-ACCUACuCGgCUGC-CCG----GCGGC- -5'
6977 5' -60.1 NC_001875.2 + 37303 0.74 0.276691
Target:  5'- aUACguUGGAgaccUGcacGCCGACGGGCUGCCGu -3'
miRNA:   3'- cAUG--ACCU----ACu--CGGCUGCCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 37576 0.68 0.565968
Target:  5'- -gAgUGGAUGcGCCGGCGcgagcgccgcggccGGCCGCaCGg -3'
miRNA:   3'- caUgACCUACuCGGCUGC--------------CCGGCG-GC- -5'
6977 5' -60.1 NC_001875.2 + 42869 0.71 0.419516
Target:  5'- -aACUGGAUGAGUCGuugcagguguuUGGGgucCCGCCGa -3'
miRNA:   3'- caUGACCUACUCGGCu----------GCCC---GGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 48019 0.66 0.698699
Target:  5'- cGUGgUGGc--GGCCcACGuGGCCGCCGc -3'
miRNA:   3'- -CAUgACCuacUCGGcUGC-CCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 49304 0.71 0.402509
Target:  5'- --cCUGGAccUGAGCCaccugcaguuGcACGGGCCGCCc -3'
miRNA:   3'- cauGACCU--ACUCGG----------C-UGCCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 49330 0.67 0.632855
Target:  5'- -aACUGGcacaguuccugcagcGUGGG-CGGCGGGCCGUgGu -3'
miRNA:   3'- caUGACC---------------UACUCgGCUGCCCGGCGgC- -5'
6977 5' -60.1 NC_001875.2 + 74139 0.69 0.529761
Target:  5'- -aGCUGGAguucgaGGGCgCGGCGcccGCCGCCGc -3'
miRNA:   3'- caUGACCUa-----CUCG-GCUGCc--CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 77092 0.69 0.529761
Target:  5'- -cGCUGGcgGuGCCGGCGGuG-CGCCc -3'
miRNA:   3'- caUGACCuaCuCGGCUGCC-CgGCGGc -5'
6977 5' -60.1 NC_001875.2 + 79797 0.67 0.668917
Target:  5'- ----aGGgcGGGUCGuCGGGCCGCUu -3'
miRNA:   3'- caugaCCuaCUCGGCuGCCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 82188 0.7 0.463864
Target:  5'- cGUGCUcGAUGGgcGCCGGCGGccgcucgugucGCCGCUGg -3'
miRNA:   3'- -CAUGAcCUACU--CGGCUGCC-----------CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 83577 0.66 0.678883
Target:  5'- -cACaUGaGGUGucCCGGCGGGgCGCCGc -3'
miRNA:   3'- caUG-AC-CUACucGGCUGCCCgGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 85197 1.07 0.001383
Target:  5'- aGUACUGGAUGAGCCGACGGGCCGCCGc -3'
miRNA:   3'- -CAUGACCUACUCGGCUGCCCGGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.