miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6977 5' -60.1 NC_001875.2 + 85197 1.07 0.001383
Target:  5'- aGUACUGGAUGAGCCGACGGGCCGCCGc -3'
miRNA:   3'- -CAUGACCUACUCGGCUGCCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 37102 0.66 0.718298
Target:  5'- -cGCgUGGGUGuGCgGGCGcGGCgccgCGCCGg -3'
miRNA:   3'- caUG-ACCUACuCGgCUGC-CCG----GCGGC- -5'
6977 5' -60.1 NC_001875.2 + 48019 0.66 0.698699
Target:  5'- cGUGgUGGc--GGCCcACGuGGCCGCCGc -3'
miRNA:   3'- -CAUgACCuacUCGGcUGC-CCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 79797 0.67 0.668917
Target:  5'- ----aGGgcGGGUCGuCGGGCCGCUu -3'
miRNA:   3'- caugaCCuaCUCGGCuGCCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 89289 0.67 0.628842
Target:  5'- -cACaGGGUGuaguGGCCGcAUGGcGCCGCCa -3'
miRNA:   3'- caUGaCCUAC----UCGGC-UGCC-CGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 29918 0.67 0.628842
Target:  5'- cUGCUGGAcacGuuGACaagGGGCCGCCc -3'
miRNA:   3'- cAUGACCUacuCggCUG---CCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 117354 0.67 0.61881
Target:  5'- -aACcGGcgG-GCCGGCuGGCCGUCGg -3'
miRNA:   3'- caUGaCCuaCuCGGCUGcCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 35884 0.68 0.598783
Target:  5'- ---aUGGAauUGAGCCGGCGcGuuGCCa -3'
miRNA:   3'- caugACCU--ACUCGGCUGCcCggCGGc -5'
6977 5' -60.1 NC_001875.2 + 108236 0.68 0.598783
Target:  5'- --uUUGGAcGAGCgCGucaACGGGCUGCUGg -3'
miRNA:   3'- cauGACCUaCUCG-GC---UGCCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 37576 0.68 0.565968
Target:  5'- -gAgUGGAUGcGCCGGCGcgagcgccgcggccGGCCGCaCGg -3'
miRNA:   3'- caUgACCUACuCGGCUGC--------------CCGGCG-GC- -5'
6977 5' -60.1 NC_001875.2 + 74139 0.69 0.529761
Target:  5'- -aGCUGGAguucgaGGGCgCGGCGcccGCCGCCGc -3'
miRNA:   3'- caUGACCUa-----CUCG-GCUGCc--CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 90700 0.74 0.270359
Target:  5'- ---aUGGGguuGCCGGCGcGGCCGCCGg -3'
miRNA:   3'- caugACCUacuCGGCUGC-CCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 37303 0.74 0.276691
Target:  5'- aUACguUGGAgaccUGcacGCCGACGGGCUGCCGu -3'
miRNA:   3'- cAUG--ACCU----ACu--CGGCUGCCCGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 49304 0.71 0.402509
Target:  5'- --cCUGGAccUGAGCCaccugcaguuGcACGGGCCGCCc -3'
miRNA:   3'- cauGACCU--ACUCGG----------C-UGCCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 100042 0.71 0.403349
Target:  5'- -cGCUGGuuuugcuguuugugGAGCUGACGGuGCUGCUGg -3'
miRNA:   3'- caUGACCua------------CUCGGCUGCC-CGGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 31674 0.7 0.482279
Target:  5'- -gACUGGGccagcGuGCCGGCGuGGaCCGCCGc -3'
miRNA:   3'- caUGACCUa----CuCGGCUGC-CC-GGCGGC- -5'
6977 5' -60.1 NC_001875.2 + 110273 0.7 0.482279
Target:  5'- -gGCUGGccgcgGAGCgCG-CGGGCUGCCc -3'
miRNA:   3'- caUGACCua---CUCG-GCuGCCCGGCGGc -5'
6977 5' -60.1 NC_001875.2 + 90884 0.69 0.52686
Target:  5'- cGUGCUGGccgGGGCCgcgucgggcauguuGACGGGCacgcaGCCu -3'
miRNA:   3'- -CAUGACCua-CUCGG--------------CUGCCCGg----CGGc -5'
6977 5' -60.1 NC_001875.2 + 127823 0.66 0.727996
Target:  5'- -cGCUGGAgcAGUCaGACGGGCgCGgCGu -3'
miRNA:   3'- caUGACCUacUCGG-CUGCCCG-GCgGC- -5'
6977 5' -60.1 NC_001875.2 + 109000 0.73 0.32434
Target:  5'- -gGCUGGAcgcguacgucgUGccGCCGACGGuGCCGUCGg -3'
miRNA:   3'- caUGACCU-----------ACu-CGGCUGCC-CGGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.