miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6988 5' -56.2 NC_001875.2 + 31977 0.66 0.890004
Target:  5'- -gCGUGUGGCGCGCguACGgcCGGuuUGUGa -3'
miRNA:   3'- cgGCACACUGUGCG--UGC--GCCugACAU- -5'
6988 5' -56.2 NC_001875.2 + 51965 0.66 0.883079
Target:  5'- uGCCGcac-GCGCGCGCGUGGACc--- -3'
miRNA:   3'- -CGGCacacUGUGCGUGCGCCUGacau -5'
6988 5' -56.2 NC_001875.2 + 33211 0.66 0.883079
Target:  5'- uGCCGgcaaACGCGgGCGCGGGCUc-- -3'
miRNA:   3'- -CGGCacacUGUGCgUGCGCCUGAcau -5'
6988 5' -56.2 NC_001875.2 + 27190 0.66 0.875928
Target:  5'- aCCGUcagGUGGCACGCGCuaGGAUcGg- -3'
miRNA:   3'- cGGCA---CACUGUGCGUGcgCCUGaCau -5'
6988 5' -56.2 NC_001875.2 + 40638 0.66 0.875928
Target:  5'- aGCUcaacUG-GGCGCGCACGCGccGGCUGUu -3'
miRNA:   3'- -CGGc---ACaCUGUGCGUGCGC--CUGACAu -5'
6988 5' -56.2 NC_001875.2 + 33461 0.66 0.87153
Target:  5'- gGCCGgccaguggucgaaaGUGGCGCGC-CGCGcGCUGg- -3'
miRNA:   3'- -CGGCa-------------CACUGUGCGuGCGCcUGACau -5'
6988 5' -56.2 NC_001875.2 + 75374 0.66 0.860967
Target:  5'- cGCUGaccaACACGCGCGCGGACc--- -3'
miRNA:   3'- -CGGCacacUGUGCGUGCGCCUGacau -5'
6988 5' -56.2 NC_001875.2 + 72560 0.66 0.860967
Target:  5'- cGCUGcG-GGCGCGgGCGCGGGCg--- -3'
miRNA:   3'- -CGGCaCaCUGUGCgUGCGCCUGacau -5'
6988 5' -56.2 NC_001875.2 + 82038 0.66 0.860967
Target:  5'- -aCGUG-GACAuCGCG-GCGGGCUGa- -3'
miRNA:   3'- cgGCACaCUGU-GCGUgCGCCUGACau -5'
6988 5' -56.2 NC_001875.2 + 112721 0.66 0.860967
Target:  5'- cGCCGUGguaGGCGCGuCGCGCGcACa--- -3'
miRNA:   3'- -CGGCACa--CUGUGC-GUGCGCcUGacau -5'
6988 5' -56.2 NC_001875.2 + 40042 0.66 0.860967
Target:  5'- cGUCGUGUacguuccCACGgACGCGGACgUGUu -3'
miRNA:   3'- -CGGCACAcu-----GUGCgUGCGCCUG-ACAu -5'
6988 5' -56.2 NC_001875.2 + 100582 0.67 0.845166
Target:  5'- uCUGcGUcGACGCGUACGCGGGCcGg- -3'
miRNA:   3'- cGGCaCA-CUGUGCGUGCGCCUGaCau -5'
6988 5' -56.2 NC_001875.2 + 31840 0.67 0.836968
Target:  5'- cGCUGUuuuuguuUGACAacuuuaaauCGCGCGUGGACUGg- -3'
miRNA:   3'- -CGGCAc------ACUGU---------GCGUGCGCCUGACau -5'
6988 5' -56.2 NC_001875.2 + 102863 0.67 0.82858
Target:  5'- aGgCGUGUGugGuuCGCgACGCGGACa--- -3'
miRNA:   3'- -CgGCACACugU--GCG-UGCGCCUGacau -5'
6988 5' -56.2 NC_001875.2 + 79253 0.67 0.826027
Target:  5'- aGCUGgugGugGCGCGCGUGGAgacgaugucaauguCUGUGg -3'
miRNA:   3'- -CGGCacaCugUGCGUGCGCCU--------------GACAU- -5'
6988 5' -56.2 NC_001875.2 + 89257 0.68 0.790545
Target:  5'- cGCCGaGcUGACGCGCGCGUGcgccgaccuggcgcGGCUGg- -3'
miRNA:   3'- -CGGCaC-ACUGUGCGUGCGC--------------CUGACau -5'
6988 5' -56.2 NC_001875.2 + 61894 0.68 0.784081
Target:  5'- cGCCGUGgcccGACACGCGCcgugucacgGCGGAa---- -3'
miRNA:   3'- -CGGCACa---CUGUGCGUG---------CGCCUgacau -5'
6988 5' -56.2 NC_001875.2 + 41597 0.68 0.774729
Target:  5'- cGCCGaa-GGCGCGgGCGCGGGCg--- -3'
miRNA:   3'- -CGGCacaCUGUGCgUGCGCCUGacau -5'
6988 5' -56.2 NC_001875.2 + 90405 0.68 0.765248
Target:  5'- cGCC-UGUG-CGCGCGCaGCGGccccuguuuacGCUGUAg -3'
miRNA:   3'- -CGGcACACuGUGCGUG-CGCC-----------UGACAU- -5'
6988 5' -56.2 NC_001875.2 + 70320 0.68 0.765248
Target:  5'- gGCCGccaaGCGCgaGCACGCGGACUGc- -3'
miRNA:   3'- -CGGCacacUGUG--CGUGCGCCUGACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.