miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6996 3' -58.1 NC_001875.2 + 129943 1.08 0.001802
Target:  5'- gCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130495 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130399 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130075 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101621 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101555 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101489 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101423 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101357 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101291 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101225 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 101159 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130267 1.03 0.003914
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130201 1.03 0.003914
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130135 1.03 0.003914
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130561 0.99 0.007192
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGa- -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCga -5'
6996 3' -58.1 NC_001875.2 + 17158 0.95 0.013946
Target:  5'- gGCACCCGAAAAGCAcGGUCGCCGCUg -3'
miRNA:   3'- gCGUGGGCUUUUCGUcCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130333 0.93 0.020495
Target:  5'- cCGCACCCaAAAGGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGcUUUUCGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 17091 0.92 0.023508
Target:  5'- uCGCACCCGAAAAGCAcGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUcCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 130011 0.91 0.02623
Target:  5'- -aCACCCGAAAAGCAGGGUCGuuGCUg -3'
miRNA:   3'- gcGUGGGCUUUUCGUCCCAGCggCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.