miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6996 3' -58.1 NC_001875.2 + 4560 0.66 0.80927
Target:  5'- gCGCACgUCGgcAAGCAauGUUGCCGCg -3'
miRNA:   3'- -GCGUG-GGCuuUUCGUccCAGCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 5914 0.67 0.744495
Target:  5'- aGCGCCgGcauGGCGuuGGGUagCGCCGCg -3'
miRNA:   3'- gCGUGGgCuuuUCGU--CCCA--GCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 7020 0.66 0.791432
Target:  5'- aGUugCUGGAcguAAGCGaGGUgGCCGCg -3'
miRNA:   3'- gCGugGGCUU---UUCGUcCCAgCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 7253 0.67 0.754115
Target:  5'- cCGCGCUgcagCGGccuGGCGcGGGUCGCCGaCg -3'
miRNA:   3'- -GCGUGG----GCUuu-UCGU-CCCAGCGGC-Ga -5'
6996 3' -58.1 NC_001875.2 + 11830 0.71 0.484923
Target:  5'- uCGCGCCgGu--GGCGGGGUCGgUGUa -3'
miRNA:   3'- -GCGUGGgCuuuUCGUCCCAGCgGCGa -5'
6996 3' -58.1 NC_001875.2 + 12326 0.66 0.80927
Target:  5'- aCGCGCCCGGccAGCgAGaGGUCGUguuugacggcuuCGCc -3'
miRNA:   3'- -GCGUGGGCUuuUCG-UC-CCAGCG------------GCGa -5'
6996 3' -58.1 NC_001875.2 + 13478 0.74 0.37036
Target:  5'- uCGCACUCGuacAGC-GGGcCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCuuuUCGuCCCaGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 14516 0.69 0.593478
Target:  5'- cCGCugUCGggGgaacuuGGCGGGcaCGCCGCUu -3'
miRNA:   3'- -GCGugGGCuuU------UCGUCCcaGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 15090 0.66 0.795047
Target:  5'- aGCGCCUGGuuGAGGCGGGGUuuuucuaccaguaugUGuuuCCGCUu -3'
miRNA:   3'- gCGUGGGCU--UUUCGUCCCA---------------GC---GGCGA- -5'
6996 3' -58.1 NC_001875.2 + 16380 0.68 0.654614
Target:  5'- cCGCGCCCGcuAgcucaacgcGGUAGGugcgguguucGUCGCCGCc -3'
miRNA:   3'- -GCGUGGGCuuU---------UCGUCC----------CAGCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 17091 0.92 0.023508
Target:  5'- uCGCACCCGAAAAGCAcGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUcCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 17158 0.95 0.013946
Target:  5'- gGCACCCGAAAAGCAcGGUCGCCGCUg -3'
miRNA:   3'- gCGUGGGCUUUUCGUcCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 21086 0.67 0.754115
Target:  5'- aCGCGC------GGCGGcGGUCGCCGCg -3'
miRNA:   3'- -GCGUGggcuuuUCGUC-CCAGCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 24365 0.75 0.324085
Target:  5'- uGUAUuuGAAAA-CGGGGUCGCCGUUg -3'
miRNA:   3'- gCGUGggCUUUUcGUCCCAGCGGCGA- -5'
6996 3' -58.1 NC_001875.2 + 29859 0.72 0.44776
Target:  5'- gGCACCUGGGAAaaCGGGGUCGUCGa- -3'
miRNA:   3'- gCGUGGGCUUUUc-GUCCCAGCGGCga -5'
6996 3' -58.1 NC_001875.2 + 33545 0.66 0.782295
Target:  5'- aGCACgCGuu-GGCcacaguGcGGUCGCCGCg -3'
miRNA:   3'- gCGUGgGCuuuUCGu-----C-CCAGCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 33916 0.67 0.744495
Target:  5'- aCGUACCCcucgucGAAAcgcAGCGGGcGUCGgCGCc -3'
miRNA:   3'- -GCGUGGG------CUUU---UCGUCC-CAGCgGCGa -5'
6996 3' -58.1 NC_001875.2 + 36146 0.72 0.424469
Target:  5'- gCGCGCCCGAGccGUAGauugcgcauuaaaccGGUUGCCGUg -3'
miRNA:   3'- -GCGUGGGCUUuuCGUC---------------CCAGCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 37774 0.66 0.763627
Target:  5'- gCGCAUguuuauggagCUGAAAcAGCAGGugugucguuuGUCGCCGCg -3'
miRNA:   3'- -GCGUG----------GGCUUU-UCGUCC----------CAGCGGCGa -5'
6996 3' -58.1 NC_001875.2 + 38542 0.66 0.782295
Target:  5'- uGCAgCUCGu--GGCcGGGUUGCUGCg -3'
miRNA:   3'- gCGU-GGGCuuuUCGuCCCAGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.