miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6998 3' -58.1 NC_001875.2 + 130561 0.99 0.007192
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGa- -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCga -5'
6998 3' -58.1 NC_001875.2 + 130495 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130427 0.66 0.80927
Target:  5'- aCGCACCgCuAAAaauAGCacaccAGGG-CGCCGCUg -3'
miRNA:   3'- -GCGUGG-GcUUU---UCG-----UCCCaGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130399 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130333 0.93 0.020495
Target:  5'- cCGCACCCaAAAGGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGcUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130267 1.03 0.003914
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130201 1.03 0.003914
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130135 1.03 0.003914
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130075 1.08 0.001853
Target:  5'- uCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 130011 0.91 0.02623
Target:  5'- -aCACCCGAAAAGCAGGGUCGuuGCUg -3'
miRNA:   3'- gcGUGGGCUUUUCGUCCCAGCggCGA- -5'
6998 3' -58.1 NC_001875.2 + 129943 1.08 0.001802
Target:  5'- gCGCACCCGAAAAGCAGGGUCGCCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCGGCGA- -5'
6998 3' -58.1 NC_001875.2 + 128705 0.66 0.791432
Target:  5'- cCGCGUCCGcgcAGCGGGcuUCGCCGCc -3'
miRNA:   3'- -GCGUGGGCuuuUCGUCCc-AGCGGCGa -5'
6998 3' -58.1 NC_001875.2 + 126516 0.69 0.634221
Target:  5'- cCGCACUCGgcGAGCAGGua-GCgCGCa -3'
miRNA:   3'- -GCGUGGGCuuUUCGUCCcagCG-GCGa -5'
6998 3' -58.1 NC_001875.2 + 125046 0.68 0.685047
Target:  5'- aGCgACCCGAucuGC-GGGUCGCUGa- -3'
miRNA:   3'- gCG-UGGGCUuuuCGuCCCAGCGGCga -5'
6998 3' -58.1 NC_001875.2 + 122733 0.69 0.644422
Target:  5'- gGCGUCCGAGuucguGGCGGGGUuagCGCCGaCUc -3'
miRNA:   3'- gCGUGGGCUUu----UCGUCCCA---GCGGC-GA- -5'
6998 3' -58.1 NC_001875.2 + 116241 0.68 0.669865
Target:  5'- aCGCACCaCGGGAAGCGccuccauGGGaacauacuggcgaCGCCGCa -3'
miRNA:   3'- -GCGUGG-GCUUUUCGU-------CCCa------------GCGGCGa -5'
6998 3' -58.1 NC_001875.2 + 113827 0.67 0.744495
Target:  5'- aGCGCuCUGGGAacAGCgggucGGGGUCggGCCGCa -3'
miRNA:   3'- gCGUG-GGCUUU--UCG-----UCCCAG--CGGCGa -5'
6998 3' -58.1 NC_001875.2 + 110164 0.66 0.763627
Target:  5'- uCGCGCUCGucGGGCGGcGUCGCacugCGCUc -3'
miRNA:   3'- -GCGUGGGCuuUUCGUCcCAGCG----GCGA- -5'
6998 3' -58.1 NC_001875.2 + 105894 0.67 0.715088
Target:  5'- aGUACCCGAu-GGC-GGG-CGCgGCg -3'
miRNA:   3'- gCGUGGGCUuuUCGuCCCaGCGgCGa -5'
6998 3' -58.1 NC_001875.2 + 102485 0.68 0.685047
Target:  5'- gGCgacgACCCGGAaacggaccacAAGCGGuGGgCGCCGCa -3'
miRNA:   3'- gCG----UGGGCUU----------UUCGUC-CCaGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.