miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 5' -49.5 NC_001875.2 + 109296 1.1 0.008693
Target:  5'- gAGCGCUCAAACCAGUUUAAAGCGGCGu -3'
miRNA:   3'- -UCGCGAGUUUGGUCAAAUUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 31982 0.81 0.434882
Target:  5'- uGGCGCgCGuacGGCCGGUUUGuGAGCGGCGg -3'
miRNA:   3'- -UCGCGaGU---UUGGUCAAAU-UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 85276 0.77 0.633006
Target:  5'- gAGCGCccCGAACaCGGUUUGcgcGGGCGGCGc -3'
miRNA:   3'- -UCGCGa-GUUUG-GUCAAAU---UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 103238 0.77 0.654803
Target:  5'- uGCGCUC-AACCAgGUUUucguAGGCGGUGg -3'
miRNA:   3'- uCGCGAGuUUGGU-CAAAu---UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 33449 0.76 0.687318
Target:  5'- cGCGUUCAGcgcggccgGCCAGUggucgAAAGUGGCGc -3'
miRNA:   3'- uCGCGAGUU--------UGGUCAaa---UUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 39639 0.75 0.759839
Target:  5'- uGGCGCgcagCGAACCgcgcgcgAGUUUGGgccGGCGGCGc -3'
miRNA:   3'- -UCGCGa---GUUUGG-------UCAAAUU---UCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 62326 0.75 0.77093
Target:  5'- aAGCGUUCGuucGCCAGUUUuAAGUgGGCGc -3'
miRNA:   3'- -UCGCGAGUu--UGGUCAAAuUUCG-CCGC- -5'
7005 5' -49.5 NC_001875.2 + 131513 0.74 0.780865
Target:  5'- cGGCGCgCGGugCAGcggcugGAAGCGGCGc -3'
miRNA:   3'- -UCGCGaGUUugGUCaaa---UUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 127387 0.74 0.79065
Target:  5'- cGGCGCUCAGagccugGCCaaAGUgcu-GGCGGCGc -3'
miRNA:   3'- -UCGCGAGUU------UGG--UCAaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 82993 0.74 0.800272
Target:  5'- cGcCGCUCGucGCCGGcgggcUUGAAGCGGCGc -3'
miRNA:   3'- uC-GCGAGUu-UGGUCa----AAUUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 110740 0.74 0.800272
Target:  5'- gGGCGC---GugCAGUUUAAGcGCGGCGa -3'
miRNA:   3'- -UCGCGaguUugGUCAAAUUU-CGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 64638 0.73 0.828062
Target:  5'- cAGCGCaacuuuGACCAGUUcgcAAAGCGGCu -3'
miRNA:   3'- -UCGCGagu---UUGGUCAAa--UUUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 4612 0.73 0.862245
Target:  5'- cGCGCUCAAACaCGGUgua---CGGCGa -3'
miRNA:   3'- uCGCGAGUUUG-GUCAaauuucGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 114552 0.73 0.862245
Target:  5'- cGGCGCUCAcgacgcuCCAGU-----GCGGCGg -3'
miRNA:   3'- -UCGCGAGUuu-----GGUCAaauuuCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 69265 0.72 0.877955
Target:  5'- cGCgGCUCGAGCC-GU----GGCGGCGg -3'
miRNA:   3'- uCG-CGAGUUUGGuCAaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 34902 0.72 0.877955
Target:  5'- gAGCGCgagaUCAAggcgcGCCAGUUUuuuggguGCGGCGu -3'
miRNA:   3'- -UCGCG----AGUU-----UGGUCAAAuuu----CGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 63696 0.72 0.877955
Target:  5'- cAGCGUUCGccgAugCGGUUUGucggucGCGGCGa -3'
miRNA:   3'- -UCGCGAGU---UugGUCAAAUuu----CGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 95715 0.72 0.89267
Target:  5'- cGCGCUgAAACgcgaAGUgcauGAGCGGCGc -3'
miRNA:   3'- uCGCGAgUUUGg---UCAaau-UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 100983 0.71 0.906348
Target:  5'- cGCGCUgCAGGCCGcggcGUUUGcGGCGGUu -3'
miRNA:   3'- uCGCGA-GUUUGGU----CAAAUuUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 118769 0.71 0.906348
Target:  5'- -aCGgaCAAGCCcgAGUUUAGGGUGGCGc -3'
miRNA:   3'- ucGCgaGUUUGG--UCAAAUUUCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.