miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 5' -49.5 NC_001875.2 + 47 0.7 0.935851
Target:  5'- uGGUGCUCAAcUCGGcggc-GGCGGCGa -3'
miRNA:   3'- -UCGCGAGUUuGGUCaaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 3108 0.67 0.99075
Target:  5'- gGGCGCggcucgcggcgCAGACCu-----GGGCGGCGa -3'
miRNA:   3'- -UCGCGa----------GUUUGGucaaauUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 4612 0.73 0.862245
Target:  5'- cGCGCUCAAACaCGGUgua---CGGCGa -3'
miRNA:   3'- uCGCGAGUUUG-GUCAaauuucGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 7047 0.67 0.989394
Target:  5'- cGCGCUUGucGGCCuGGUUccgcuGCGGCGa -3'
miRNA:   3'- uCGCGAGU--UUGG-UCAAauuu-CGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 7526 0.67 0.989394
Target:  5'- uGGCcCUCGucgucuaccucauauACCGGUUUcuaaucaAAGGCGGCGg -3'
miRNA:   3'- -UCGcGAGUu--------------UGGUCAAA-------UUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 10483 0.69 0.969244
Target:  5'- uGGCGCUUgcuGAACgAGUUcgagcugcUGgcGCGGCGg -3'
miRNA:   3'- -UCGCGAG---UUUGgUCAA--------AUuuCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 11057 0.69 0.962418
Target:  5'- cGCGCgCAAACugcagCAGUUUGgcGUGGCGc -3'
miRNA:   3'- uCGCGaGUUUG-----GUCAAAUuuCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 12673 0.67 0.986221
Target:  5'- cGCGCgccgCGuuGGCCGGgugu-GGCGGCa -3'
miRNA:   3'- uCGCGa---GU--UUGGUCaaauuUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 13980 0.7 0.954604
Target:  5'- cGCuGCUC-AACCuGUUUGAccugguGGUGGCGg -3'
miRNA:   3'- uCG-CGAGuUUGGuCAAAUU------UCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 16983 0.71 0.912789
Target:  5'- -uUGCUUAAugGCCAGUUUAAAGCcGCa -3'
miRNA:   3'- ucGCGAGUU--UGGUCAAAUUUCGcCGc -5'
7005 5' -49.5 NC_001875.2 + 22562 0.66 0.99487
Target:  5'- gAGCGCUCGGuuuuaacgcCCGGgc----GCGGCGc -3'
miRNA:   3'- -UCGCGAGUUu--------GGUCaaauuuCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 25303 0.67 0.991966
Target:  5'- cGCGCUCGucgacCCAGUUUAucgugaucGAG-GGCa -3'
miRNA:   3'- uCGCGAGUuu---GGUCAAAU--------UUCgCCGc -5'
7005 5' -49.5 NC_001875.2 + 26107 0.67 0.989394
Target:  5'- aGGaGCUCAucGACCAGU--GGGGCaGCGa -3'
miRNA:   3'- -UCgCGAGU--UUGGUCAaaUUUCGcCGC- -5'
7005 5' -49.5 NC_001875.2 + 29054 0.66 0.99479
Target:  5'- cGCGCUCAAGaccauucCCGGcaguUUUGAAGCGcuGCa -3'
miRNA:   3'- uCGCGAGUUU-------GGUC----AAAUUUCGC--CGc -5'
7005 5' -49.5 NC_001875.2 + 29198 0.66 0.99487
Target:  5'- aGGCaaCUUuGGCCAGUUgauGGCGGCc -3'
miRNA:   3'- -UCGc-GAGuUUGGUCAAauuUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 31982 0.81 0.434882
Target:  5'- uGGCGCgCGuacGGCCGGUUUGuGAGCGGCGg -3'
miRNA:   3'- -UCGCGaGU---UUGGUCAAAU-UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 32866 0.66 0.993051
Target:  5'- uAGCGUUCAcGCgG----AAAGCGGCGc -3'
miRNA:   3'- -UCGCGAGUuUGgUcaaaUUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 33064 0.66 0.995623
Target:  5'- uAGCGUUCcgcgcggcuCCAGacUUUGAuGGCGGCGc -3'
miRNA:   3'- -UCGCGAGuuu------GGUC--AAAUU-UCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 33449 0.76 0.687318
Target:  5'- cGCGUUCAGcgcggccgGCCAGUggucgAAAGUGGCGc -3'
miRNA:   3'- uCGCGAGUU--------UGGUCAaa---UUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 34129 0.66 0.99487
Target:  5'- uGCGCguagUGGugCAGUUUGAAGgGGg- -3'
miRNA:   3'- uCGCGa---GUUugGUCAAAUUUCgCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.