miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 3' -48.1 NC_001875.2 + 3551 0.66 0.999397
Target:  5'- aCCGGCGCCGUGGcgcgucucAAAUac-UUGUc-- -3'
miRNA:   3'- -GGCCGCGGCACU--------UUUGgaaAACAacg -5'
7007 3' -48.1 NC_001875.2 + 4802 0.73 0.923038
Target:  5'- gCCGGCGCCcUGucgccagcuuccaAAAACCg---GUUGCa -3'
miRNA:   3'- -GGCCGCGGcAC-------------UUUUGGaaaaCAACG- -5'
7007 3' -48.1 NC_001875.2 + 8855 0.72 0.961384
Target:  5'- gCUGGCGCaCGUGuu-GCCggucaaaGUUGCa -3'
miRNA:   3'- -GGCCGCG-GCACuuuUGGaaaa---CAACG- -5'
7007 3' -48.1 NC_001875.2 + 9160 0.66 0.999252
Target:  5'- aCGGCGCaCGcc--AACUUUUUGcUGCg -3'
miRNA:   3'- gGCCGCG-GCacuuUUGGAAAACaACG- -5'
7007 3' -48.1 NC_001875.2 + 10906 0.71 0.973995
Target:  5'- uUGGCGCaaaaGUGGuucagccAAACCgcggUGUUGCg -3'
miRNA:   3'- gGCCGCGg---CACU-------UUUGGaaa-ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 12672 0.67 0.998626
Target:  5'- aCGcGCGCCGcGuuGGCCgggUGUgGCg -3'
miRNA:   3'- gGC-CGCGGCaCuuUUGGaaaACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 14175 0.66 0.998802
Target:  5'- aUGGgGCCGUGcGcaaagcgccuacguGACUUgugUGUUGCg -3'
miRNA:   3'- gGCCgCGGCACuU--------------UUGGAaa-ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 16762 0.66 0.999186
Target:  5'- cCCGGCGUCGUGAcugcgcgccgcguaAAGCUUcaccaUGUuuccaauUGCg -3'
miRNA:   3'- -GGCCGCGGCACU--------------UUUGGAaa---ACA-------ACG- -5'
7007 3' -48.1 NC_001875.2 + 16902 0.66 0.999516
Target:  5'- gCGGCGCCGcGAugucGCUgaUUGU-GCu -3'
miRNA:   3'- gGCCGCGGCaCUuu--UGGaaAACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 17732 0.69 0.988253
Target:  5'- aCCGGCGUCGUGuccAGCCaaacgccguUUGCg -3'
miRNA:   3'- -GGCCGCGGCACuu-UUGGaaaac----AACG- -5'
7007 3' -48.1 NC_001875.2 + 18841 0.68 0.996618
Target:  5'- uUGGCGCUGUGGGAcCCcUUUGg--- -3'
miRNA:   3'- gGCCGCGGCACUUUuGGaAAACaacg -5'
7007 3' -48.1 NC_001875.2 + 20147 0.69 0.989849
Target:  5'- uCCaGCGCUG-GAAcgcuaccaaacacaAACCgUUUGUUGCa -3'
miRNA:   3'- -GGcCGCGGCaCUU--------------UUGGaAAACAACG- -5'
7007 3' -48.1 NC_001875.2 + 20719 0.67 0.997146
Target:  5'- gUGGCGCCGUGAcgcauugcuGCCg-----UGCa -3'
miRNA:   3'- gGCCGCGGCACUuu-------UGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 29962 0.66 0.999397
Target:  5'- aCGGCGCUGUuu--GCgUUUUUGUuuUGCa -3'
miRNA:   3'- gGCCGCGGCAcuuuUG-GAAAACA--ACG- -5'
7007 3' -48.1 NC_001875.2 + 30196 0.66 0.999059
Target:  5'- uUGGCGCCGUucgccgcGAcgGCCg-UUGUgGCg -3'
miRNA:   3'- gGCCGCGGCA-------CUuuUGGaaAACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 31599 0.69 0.988854
Target:  5'- uCCGGCGCCGUGccgugggcGGACCaca---UGCg -3'
miRNA:   3'- -GGCCGCGGCACu-------UUUGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 31876 0.69 0.991149
Target:  5'- aCUGGCGCCGguugcaaguUGgcGACCgUUUUGUaaacuuggccgcgcUGCa -3'
miRNA:   3'- -GGCCGCGGC---------ACuuUUGG-AAAACA--------------ACG- -5'
7007 3' -48.1 NC_001875.2 + 35554 0.71 0.974273
Target:  5'- cCCGGcCGCCuacGAcgGCUUUUUGggGCa -3'
miRNA:   3'- -GGCC-GCGGca-CUuuUGGAAAACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 36417 0.68 0.996618
Target:  5'- aCgGGCGCCGc-GAGGCCUUaccuUUGCg -3'
miRNA:   3'- -GgCCGCGGCacUUUUGGAAaac-AACG- -5'
7007 3' -48.1 NC_001875.2 + 37414 0.68 0.994532
Target:  5'- aCGGCG-CGUGGAAgagGCCg--UGgcGCa -3'
miRNA:   3'- gGCCGCgGCACUUU---UGGaaaACaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.