miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 3' -48.1 NC_001875.2 + 126503 0.68 0.994532
Target:  5'- cCUGaCGCCGUGAAGACUg-----UGCa -3'
miRNA:   3'- -GGCcGCGGCACUUUUGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 91484 0.7 0.979389
Target:  5'- cCUGGCGCCG-GAGAGCaac---UUGCa -3'
miRNA:   3'- -GGCCGCGGCaCUUUUGgaaaacAACG- -5'
7007 3' -48.1 NC_001875.2 + 66190 0.7 0.987303
Target:  5'- gCCGcGUGUCGUcGGGACCg--UGUUGUg -3'
miRNA:   3'- -GGC-CGCGGCAcUUUUGGaaaACAACG- -5'
7007 3' -48.1 NC_001875.2 + 31599 0.69 0.988854
Target:  5'- uCCGGCGCCGUGccgugggcGGACCaca---UGCg -3'
miRNA:   3'- -GGCCGCGGCACu-------UUUGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 125276 0.69 0.990254
Target:  5'- gCUGGCGCUGUcGggGuacACCU--UGUUGa -3'
miRNA:   3'- -GGCCGCGGCA-CuuU---UGGAaaACAACg -5'
7007 3' -48.1 NC_001875.2 + 31876 0.69 0.991149
Target:  5'- aCUGGCGCCGguugcaaguUGgcGACCgUUUUGUaaacuuggccgcgcUGCa -3'
miRNA:   3'- -GGCCGCGGC---------ACuuUUGG-AAAACA--------------ACG- -5'
7007 3' -48.1 NC_001875.2 + 100008 0.69 0.992638
Target:  5'- gCGGUGCUGgucGcAAACCUggugcacUGUUGCg -3'
miRNA:   3'- gGCCGCGGCa--CuUUUGGAaa-----ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 37414 0.68 0.994532
Target:  5'- aCGGCG-CGUGGAAgagGCCg--UGgcGCa -3'
miRNA:   3'- gGCCGCgGCACUUU---UGGaaaACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 49465 0.68 0.994532
Target:  5'- aCGGCGCCGUGGuuccgcgcgcGCCcgaguUUGCa -3'
miRNA:   3'- gGCCGCGGCACUuu--------UGGaaaacAACG- -5'
7007 3' -48.1 NC_001875.2 + 35554 0.71 0.974273
Target:  5'- cCCGGcCGCCuacGAcgGCUUUUUGggGCa -3'
miRNA:   3'- -GGCC-GCGGca-CUuuUGGAAAACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 10906 0.71 0.973995
Target:  5'- uUGGCGCaaaaGUGGuucagccAAACCgcggUGUUGCg -3'
miRNA:   3'- gGCCGCGg---CACU-------UUUGGaaa-ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 41819 0.71 0.964957
Target:  5'- gCCGGCGCCGc---GGCCa---GUUGCg -3'
miRNA:   3'- -GGCCGCGGCacuuUUGGaaaaCAACG- -5'
7007 3' -48.1 NC_001875.2 + 86339 0.78 0.739958
Target:  5'- uUGGCuGCCGUGGAGGCac--UGUUGCa -3'
miRNA:   3'- gGCCG-CGGCACUUUUGgaaaACAACG- -5'
7007 3' -48.1 NC_001875.2 + 48867 0.78 0.750202
Target:  5'- gCGGCGCCGcgagGAAAACgUagUGUUGUg -3'
miRNA:   3'- gGCCGCGGCa---CUUUUGgAaaACAACG- -5'
7007 3' -48.1 NC_001875.2 + 49658 0.77 0.780196
Target:  5'- gCCGGCGCCcaucGAGcacGACCUg--GUUGCa -3'
miRNA:   3'- -GGCCGCGGca--CUU---UUGGAaaaCAACG- -5'
7007 3' -48.1 NC_001875.2 + 115771 0.75 0.865893
Target:  5'- aCCGGCGCCGUGugcguCCacagcgacgagUGUUGUa -3'
miRNA:   3'- -GGCCGCGGCACuuuu-GGaaa--------ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 53118 0.75 0.869044
Target:  5'- -aGuGCGCCGUcGAAAACUUUgccgccuaUUGUUGCg -3'
miRNA:   3'- ggC-CGCGGCA-CUUUUGGAA--------AACAACG- -5'
7007 3' -48.1 NC_001875.2 + 4802 0.73 0.923038
Target:  5'- gCCGGCGCCcUGucgccagcuuccaAAAACCg---GUUGCa -3'
miRNA:   3'- -GGCCGCGGcAC-------------UUUUGGaaaaCAACG- -5'
7007 3' -48.1 NC_001875.2 + 122695 0.72 0.944591
Target:  5'- gCGuGCGCCGUGGAcACCgaacUGgcGCg -3'
miRNA:   3'- gGC-CGCGGCACUUuUGGaaa-ACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 8855 0.72 0.961384
Target:  5'- gCUGGCGCaCGUGuu-GCCggucaaaGUUGCa -3'
miRNA:   3'- -GGCCGCG-GCACuuuUGGaaaa---CAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.