miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 3' -54 NC_001875.2 + 113750 1.03 0.008227
Target:  5'- aCCAGCGAAACGAGCAGCCGCCGUa-- -3'
miRNA:   3'- -GGUCGCUUUGCUCGUCGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 49640 0.87 0.092575
Target:  5'- gCGGCGAcACGAGCGGCCGCCGg--- -3'
miRNA:   3'- gGUCGCUuUGCUCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 66311 0.81 0.238582
Target:  5'- gCCGGCGAGuugaugGCGugGGCGGCCGCCGUa-- -3'
miRNA:   3'- -GGUCGCUU------UGC--UCGUCGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 35512 0.8 0.283319
Target:  5'- gCCGGC--AACGGGCGGCCGCgCGUUAu -3'
miRNA:   3'- -GGUCGcuUUGCUCGUCGGCG-GCAAUu -5'
7011 3' -54 NC_001875.2 + 1811 0.76 0.445247
Target:  5'- gUCGGCGGAugugaccACGAGCAuGCCGCCGc--- -3'
miRNA:   3'- -GGUCGCUU-------UGCUCGU-CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 1763 0.76 0.445247
Target:  5'- gUCGGCGGAugugaccACGAGCAuGCCGCCGc--- -3'
miRNA:   3'- -GGUCGCUU-------UGCUCGU-CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 66731 0.75 0.4748
Target:  5'- aCGGCGAGGCuGAGCugcuuGGCCGCCucGUUGAg -3'
miRNA:   3'- gGUCGCUUUG-CUCG-----UCGGCGG--CAAUU- -5'
7011 3' -54 NC_001875.2 + 23863 0.74 0.565458
Target:  5'- gCCAGCG-GACGuGCAGCCGuuGcUGGu -3'
miRNA:   3'- -GGUCGCuUUGCuCGUCGGCggCaAUU- -5'
7011 3' -54 NC_001875.2 + 5510 0.73 0.586306
Target:  5'- aCCGGCGcacGCGcGCaguuuacgccGGCCGCCGUUGAg -3'
miRNA:   3'- -GGUCGCuu-UGCuCG----------UCGGCGGCAAUU- -5'
7011 3' -54 NC_001875.2 + 4566 0.73 0.607295
Target:  5'- gCCAGCaacGCGAGCAGCCGCa----- -3'
miRNA:   3'- -GGUCGcuuUGCUCGUCGGCGgcaauu -5'
7011 3' -54 NC_001875.2 + 68072 0.72 0.649442
Target:  5'- -aAGUGAAACGuGUAGUCGCCGa--- -3'
miRNA:   3'- ggUCGCUUUGCuCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 100170 0.72 0.659964
Target:  5'- aCGGUGGGcGCGAGCGGCaugaaaagcgCGCCGUUGu -3'
miRNA:   3'- gGUCGCUU-UGCUCGUCG----------GCGGCAAUu -5'
7011 3' -54 NC_001875.2 + 21658 0.72 0.670462
Target:  5'- gCCAGCGcGGACGAGCGcagugcgacGCCGCCc---- -3'
miRNA:   3'- -GGUCGC-UUUGCUCGU---------CGGCGGcaauu -5'
7011 3' -54 NC_001875.2 + 94225 0.72 0.670462
Target:  5'- cCCAuGuCGucGGCGAGCAcGCCGCCGUg-- -3'
miRNA:   3'- -GGU-C-GCu-UUGCUCGU-CGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 68116 0.71 0.712029
Target:  5'- gCCGGCGAAGCGcccGCcGUCGCCGc--- -3'
miRNA:   3'- -GGUCGCUUUGCu--CGuCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 127411 0.71 0.732419
Target:  5'- gCUGGCGgcGCGcgucAGCAuGCCGCCGUg-- -3'
miRNA:   3'- -GGUCGCuuUGC----UCGU-CGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 93864 0.7 0.742481
Target:  5'- gUCGGCGcuGAGCGcGCAgGCCGCCGcgUGAa -3'
miRNA:   3'- -GGUCGC--UUUGCuCGU-CGGCGGCa-AUU- -5'
7011 3' -54 NC_001875.2 + 102009 0.7 0.742481
Target:  5'- gCGGCGGcgGugGAcuGCAGCgUGCCGUUGAc -3'
miRNA:   3'- gGUCGCU--UugCU--CGUCG-GCGGCAAUU- -5'
7011 3' -54 NC_001875.2 + 83031 0.7 0.742481
Target:  5'- gCAGCGAGugcgccACGugaucGCGGCUGCCGUa-- -3'
miRNA:   3'- gGUCGCUU------UGCu----CGUCGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 66776 0.7 0.742481
Target:  5'- cCCAGCGuguUG-GC-GCCGCCGUUGu -3'
miRNA:   3'- -GGUCGCuuuGCuCGuCGGCGGCAAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.