miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 3' -54 NC_001875.2 + 44535 0.69 0.835838
Target:  5'- aCCauGGCGuaaucGACGuugGGCAGCCGCgCGUUGc -3'
miRNA:   3'- -GG--UCGCu----UUGC---UCGUCGGCG-GCAAUu -5'
7011 3' -54 NC_001875.2 + 48856 0.7 0.75244
Target:  5'- gCCGGCGA--CGAGCGGC-GCCGc--- -3'
miRNA:   3'- -GGUCGCUuuGCUCGUCGgCGGCaauu -5'
7011 3' -54 NC_001875.2 + 88236 0.7 0.762288
Target:  5'- aCGGCGcAAGCGGcGCGcGCCGCCGc--- -3'
miRNA:   3'- gGUCGC-UUUGCU-CGU-CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 113839 0.7 0.772012
Target:  5'- aCAGCGGGuCGGGgucgGGCCGCaCGUUGAa -3'
miRNA:   3'- gGUCGCUUuGCUCg---UCGGCG-GCAAUU- -5'
7011 3' -54 NC_001875.2 + 117347 0.7 0.781604
Target:  5'- gCgGGCGAAccgGCGGGCcggcuGGCCGUCGggGAg -3'
miRNA:   3'- -GgUCGCUU---UGCUCG-----UCGGCGGCaaUU- -5'
7011 3' -54 NC_001875.2 + 2711 0.69 0.800352
Target:  5'- uUCGGCGuGAAUguucaugauaGGGCAGCCGCCGc--- -3'
miRNA:   3'- -GGUCGC-UUUG----------CUCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 70253 0.69 0.800352
Target:  5'- gCCGGCGcc-CGAGCcGUCGCCGcUAAu -3'
miRNA:   3'- -GGUCGCuuuGCUCGuCGGCGGCaAUU- -5'
7011 3' -54 NC_001875.2 + 59711 0.69 0.82724
Target:  5'- gCUGGCG-AGCGAGCAGCgGCuCGc--- -3'
miRNA:   3'- -GGUCGCuUUGCUCGUCGgCG-GCaauu -5'
7011 3' -54 NC_001875.2 + 84341 0.69 0.82724
Target:  5'- gCGGCGAGugGCgGAGCGGCugCGCCGg--- -3'
miRNA:   3'- gGUCGCUU--UG-CUCGUCG--GCGGCaauu -5'
7011 3' -54 NC_001875.2 + 66776 0.7 0.742481
Target:  5'- cCCAGCGuguUG-GC-GCCGCCGUUGu -3'
miRNA:   3'- -GGUCGCuuuGCuCGuCGGCGGCAAUu -5'
7011 3' -54 NC_001875.2 + 83031 0.7 0.742481
Target:  5'- gCAGCGAGugcgccACGugaucGCGGCUGCCGUa-- -3'
miRNA:   3'- gGUCGCUU------UGCu----CGUCGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 100170 0.72 0.659964
Target:  5'- aCGGUGGGcGCGAGCGGCaugaaaagcgCGCCGUUGu -3'
miRNA:   3'- gGUCGCUU-UGCUCGUCG----------GCGGCAAUu -5'
7011 3' -54 NC_001875.2 + 49640 0.87 0.092575
Target:  5'- gCGGCGAcACGAGCGGCCGCCGg--- -3'
miRNA:   3'- gGUCGCUuUGCUCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 66311 0.81 0.238582
Target:  5'- gCCGGCGAGuugaugGCGugGGCGGCCGCCGUa-- -3'
miRNA:   3'- -GGUCGCUU------UGC--UCGUCGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 1763 0.76 0.445247
Target:  5'- gUCGGCGGAugugaccACGAGCAuGCCGCCGc--- -3'
miRNA:   3'- -GGUCGCUU-------UGCUCGU-CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 1811 0.76 0.445247
Target:  5'- gUCGGCGGAugugaccACGAGCAuGCCGCCGc--- -3'
miRNA:   3'- -GGUCGCUU-------UGCUCGU-CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 66731 0.75 0.4748
Target:  5'- aCGGCGAGGCuGAGCugcuuGGCCGCCucGUUGAg -3'
miRNA:   3'- gGUCGCUUUG-CUCG-----UCGGCGG--CAAUU- -5'
7011 3' -54 NC_001875.2 + 23863 0.74 0.565458
Target:  5'- gCCAGCG-GACGuGCAGCCGuuGcUGGu -3'
miRNA:   3'- -GGUCGCuUUGCuCGUCGGCggCaAUU- -5'
7011 3' -54 NC_001875.2 + 4566 0.73 0.607295
Target:  5'- gCCAGCaacGCGAGCAGCCGCa----- -3'
miRNA:   3'- -GGUCGcuuUGCUCGUCGGCGgcaauu -5'
7011 3' -54 NC_001875.2 + 68072 0.72 0.649442
Target:  5'- -aAGUGAAACGuGUAGUCGCCGa--- -3'
miRNA:   3'- ggUCGCUUUGCuCGUCGGCGGCaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.