miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 5' -60 NC_001875.2 + 54141 0.68 0.578345
Target:  5'- uGCaagCGGA-CGGCGGCAGUcgcgcaaauACGCgCUCGg -3'
miRNA:   3'- -CGg--GCUUcGCCGCCGUCA---------UGCG-GAGC- -5'
7011 5' -60 NC_001875.2 + 77083 0.68 0.578345
Target:  5'- uCCUGuuugcgcuGGCGGUgccGGCGGUGCGCC-CGc -3'
miRNA:   3'- cGGGCu-------UCGCCG---CCGUCAUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 79114 0.68 0.578345
Target:  5'- gGCCaCGGcguuGuCGGCGGCGG-GCGCCgCGg -3'
miRNA:   3'- -CGG-GCUu---C-GCCGCCGUCaUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 77281 0.69 0.545917
Target:  5'- cGgCCGccGCGGCGcaguacauguuucaGCAGUACGCCg-- -3'
miRNA:   3'- -CgGGCuuCGCCGC--------------CGUCAUGCGGagc -5'
7011 5' -60 NC_001875.2 + 39166 0.69 0.53911
Target:  5'- gGCCgCGAGGCGGgcCGGCGGUuGCGUggCGu -3'
miRNA:   3'- -CGG-GCUUCGCC--GCCGUCA-UGCGgaGC- -5'
7011 5' -60 NC_001875.2 + 29023 0.69 0.529436
Target:  5'- uCCCGAuuuGCGGCGGCgacGGgcuaaacgACGCgCUCa -3'
miRNA:   3'- cGGGCUu--CGCCGCCG---UCa-------UGCG-GAGc -5'
7011 5' -60 NC_001875.2 + 33862 0.69 0.529436
Target:  5'- cGCaCCGugcGCGGcCGGCAGaacgGCGUUUCGg -3'
miRNA:   3'- -CG-GGCuu-CGCC-GCCGUCa---UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 80638 0.69 0.519826
Target:  5'- cGCUCGAcgGGCGGCGcCAGaaccGCGCCgUCGu -3'
miRNA:   3'- -CGGGCU--UCGCCGCcGUCa---UGCGG-AGC- -5'
7011 5' -60 NC_001875.2 + 25927 0.69 0.519826
Target:  5'- uGCCCGAGuuuuucGUGGUGGCGccGCGCC-CGc -3'
miRNA:   3'- -CGGGCUU------CGCCGCCGUcaUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 114564 0.7 0.510287
Target:  5'- cGCUCcaguGCGGCGGauuGUGCGCgUCGg -3'
miRNA:   3'- -CGGGcuu-CGCCGCCgu-CAUGCGgAGC- -5'
7011 5' -60 NC_001875.2 + 22578 0.7 0.510287
Target:  5'- cGCCCGG-GC-GCGGCGcGUugGCCggcCGg -3'
miRNA:   3'- -CGGGCUuCGcCGCCGU-CAugCGGa--GC- -5'
7011 5' -60 NC_001875.2 + 122066 0.7 0.50082
Target:  5'- uGCCCGGAuguGCcGCGuGCGcUugGCCUCGg -3'
miRNA:   3'- -CGGGCUU---CGcCGC-CGUcAugCGGAGC- -5'
7011 5' -60 NC_001875.2 + 103119 0.7 0.482127
Target:  5'- gGCUCGcuuGGCGGCGGCGGcGC-CCUUc -3'
miRNA:   3'- -CGGGCu--UCGCCGCCGUCaUGcGGAGc -5'
7011 5' -60 NC_001875.2 + 22950 0.7 0.463777
Target:  5'- -aCCG-GGCGGCGcCAuGUACGCCUCc -3'
miRNA:   3'- cgGGCuUCGCCGCcGU-CAUGCGGAGc -5'
7011 5' -60 NC_001875.2 + 61598 0.71 0.449364
Target:  5'- gGCUCGGGcGcCGGCGGCgcuucgggcugugucGGcgGCGCCUCGg -3'
miRNA:   3'- -CGGGCUU-C-GCCGCCG---------------UCa-UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 33808 0.71 0.436957
Target:  5'- uGCCCGucGGCgcacGGCGcGCGGgggaaaaACGCCUCGu -3'
miRNA:   3'- -CGGGCu-UCG----CCGC-CGUCa------UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 84400 0.71 0.436957
Target:  5'- aGCCgGAgcuucGGCGGCGGCGcGUAuaggUGCCaUCGg -3'
miRNA:   3'- -CGGgCU-----UCGCCGCCGU-CAU----GCGG-AGC- -5'
7011 5' -60 NC_001875.2 + 124548 0.71 0.428217
Target:  5'- -gUCGggGuCGGCGGCGGgguCGCUUUGg -3'
miRNA:   3'- cgGGCuuC-GCCGCCGUCau-GCGGAGC- -5'
7011 5' -60 NC_001875.2 + 66107 0.72 0.402631
Target:  5'- gGCCCGcgcGGCgGGCGGCgAGgcgGCGCCgcccgCGg -3'
miRNA:   3'- -CGGGCu--UCG-CCGCCG-UCa--UGCGGa----GC- -5'
7011 5' -60 NC_001875.2 + 113379 0.72 0.365336
Target:  5'- uGCCCGGucAGCGGCGcGCGauucgcgcgccacgcGgaccGCGCCUCGc -3'
miRNA:   3'- -CGGGCU--UCGCCGC-CGU---------------Ca---UGCGGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.