miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 5' -60 NC_001875.2 + 49361 0.66 0.706617
Target:  5'- gGCCgUGGugcaacauGCGGCGGCGGUACcguuccuGCCgccgCGa -3'
miRNA:   3'- -CGG-GCUu-------CGCCGCCGUCAUG-------CGGa---GC- -5'
7011 5' -60 NC_001875.2 + 49663 0.67 0.687936
Target:  5'- uGCCCGcGGCGGuUGcGCAcGUAcCGCCcgUCGg -3'
miRNA:   3'- -CGGGCuUCGCC-GC-CGU-CAU-GCGG--AGC- -5'
7011 5' -60 NC_001875.2 + 52072 0.66 0.697792
Target:  5'- uGCCCGAAGCGGUGuu--UGCGCacaugCUCGc -3'
miRNA:   3'- -CGGGCUUCGCCGCcgucAUGCG-----GAGC- -5'
7011 5' -60 NC_001875.2 + 54141 0.68 0.578345
Target:  5'- uGCaagCGGA-CGGCGGCAGUcgcgcaaauACGCgCUCGg -3'
miRNA:   3'- -CGg--GCUUcGCCGCCGUCA---------UGCG-GAGC- -5'
7011 5' -60 NC_001875.2 + 54360 0.68 0.598207
Target:  5'- cGCCCGgcGCguugGGCGaGCGc-ACGCCUUGg -3'
miRNA:   3'- -CGGGCuuCG----CCGC-CGUcaUGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 57682 0.74 0.290146
Target:  5'- cGUCCaagcuGGCGGCGGCGGgcgccGCGcCCUCGa -3'
miRNA:   3'- -CGGGcu---UCGCCGCCGUCa----UGC-GGAGC- -5'
7011 5' -60 NC_001875.2 + 61598 0.71 0.449364
Target:  5'- gGCUCGGGcGcCGGCGGCgcuucgggcugugucGGcgGCGCCUCGg -3'
miRNA:   3'- -CGGGCUU-C-GCCGCCG---------------UCa-UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 63258 0.67 0.658139
Target:  5'- gGCUCGGcggccAGCGGCGccacGCGGUGCGCgaCc -3'
miRNA:   3'- -CGGGCU-----UCGCCGC----CGUCAUGCGgaGc -5'
7011 5' -60 NC_001875.2 + 63716 0.66 0.727009
Target:  5'- uGUCgGucGCGGCgacGGCGG-GCGCUUCGc -3'
miRNA:   3'- -CGGgCuuCGCCG---CCGUCaUGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 65098 0.67 0.658139
Target:  5'- cGCUcaaCGAGGCGGCcaaGCAGcucaGCCUCGc -3'
miRNA:   3'- -CGG---GCUUCGCCGc--CGUCaug-CGGAGC- -5'
7011 5' -60 NC_001875.2 + 65771 0.67 0.687936
Target:  5'- uGCgCGGcgGGCGGCGGCGcGUcgucguugaGCGCCa-- -3'
miRNA:   3'- -CGgGCU--UCGCCGCCGU-CA---------UGCGGagc -5'
7011 5' -60 NC_001875.2 + 66107 0.72 0.402631
Target:  5'- gGCCCGcgcGGCgGGCGGCgAGgcgGCGCCgcccgCGg -3'
miRNA:   3'- -CGGGCu--UCG-CCGCCG-UCa--UGCGGa----GC- -5'
7011 5' -60 NC_001875.2 + 68558 0.73 0.353702
Target:  5'- -gCCGcGGCGGCGGCGGUcgcgcaccgcgugGCGCCg-- -3'
miRNA:   3'- cgGGCuUCGCCGCCGUCA-------------UGCGGagc -5'
7011 5' -60 NC_001875.2 + 73608 0.66 0.736602
Target:  5'- cGCCaacuGuuGCGGCGGCGGcUGCGgCggcugCGg -3'
miRNA:   3'- -CGGg---CuuCGCCGCCGUC-AUGCgGa----GC- -5'
7011 5' -60 NC_001875.2 + 74946 0.67 0.658139
Target:  5'- -gCCGcuGCuGCGGCGGUACGaCCUg- -3'
miRNA:   3'- cgGGCuuCGcCGCCGUCAUGC-GGAgc -5'
7011 5' -60 NC_001875.2 + 76510 0.66 0.736602
Target:  5'- cCCCGAAGCGGCGcGuCAucaccGUcgcGCGCCa-- -3'
miRNA:   3'- cGGGCUUCGCCGC-C-GU-----CA---UGCGGagc -5'
7011 5' -60 NC_001875.2 + 77083 0.68 0.578345
Target:  5'- uCCUGuuugcgcuGGCGGUgccGGCGGUGCGCC-CGc -3'
miRNA:   3'- cGGGCu-------UCGCCG---CCGUCAUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 77281 0.69 0.545917
Target:  5'- cGgCCGccGCGGCGcaguacauguuucaGCAGUACGCCg-- -3'
miRNA:   3'- -CgGGCuuCGCCGC--------------CGUCAUGCGGagc -5'
7011 5' -60 NC_001875.2 + 77617 0.67 0.63816
Target:  5'- aGCUCGAGuacauCGGCGGCA--ACGgCUCGg -3'
miRNA:   3'- -CGGGCUUc----GCCGCCGUcaUGCgGAGC- -5'
7011 5' -60 NC_001875.2 + 79114 0.68 0.578345
Target:  5'- gGCCaCGGcguuGuCGGCGGCGG-GCGCCgCGg -3'
miRNA:   3'- -CGG-GCUu---C-GCCGCCGUCaUGCGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.