miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 5' -60 NC_001875.2 + 9729 0.67 0.687936
Target:  5'- cGCCCGAAGC-GUGGCAcGUGuugagcguccacCGCCguucCGa -3'
miRNA:   3'- -CGGGCUUCGcCGCCGU-CAU------------GCGGa---GC- -5'
7011 5' -60 NC_001875.2 + 11571 0.74 0.277157
Target:  5'- -gCCGAAGCGGgGaGCGGUguGCGCCUaCGu -3'
miRNA:   3'- cgGGCUUCGCCgC-CGUCA--UGCGGA-GC- -5'
7011 5' -60 NC_001875.2 + 13523 0.72 0.362208
Target:  5'- aCCUGcAGCGcGCGGCcGgcCGCCUCGa -3'
miRNA:   3'- cGGGCuUCGC-CGCCGuCauGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 13722 0.67 0.63816
Target:  5'- cGCCCGccuuGGCGGCaauGCGGuUGCGCaggCGg -3'
miRNA:   3'- -CGGGCu---UCGCCGc--CGUC-AUGCGga-GC- -5'
7011 5' -60 NC_001875.2 + 19935 0.73 0.353702
Target:  5'- gGCCCGuacacgGAGCGGcCGGCgcgacGGUccggccgGCGCCUCGc -3'
miRNA:   3'- -CGGGC------UUCGCC-GCCG-----UCA-------UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 21078 0.66 0.727009
Target:  5'- gGCaaaaGAcgcGCGGCGGCGGU-CGCCgCGc -3'
miRNA:   3'- -CGgg--CUu--CGCCGCCGUCAuGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 21364 0.68 0.598207
Target:  5'- uGCuuGAcGCGGUacuuGCGGUugGCCUUa -3'
miRNA:   3'- -CGggCUuCGCCGc---CGUCAugCGGAGc -5'
7011 5' -60 NC_001875.2 + 22578 0.7 0.510287
Target:  5'- cGCCCGG-GC-GCGGCGcGUugGCCggcCGg -3'
miRNA:   3'- -CGGGCUuCGcCGCCGU-CAugCGGa--GC- -5'
7011 5' -60 NC_001875.2 + 22824 0.67 0.678037
Target:  5'- gGUCCGAcGGCaccgucGGCGGCAcgacGUACGCgUCc -3'
miRNA:   3'- -CGGGCU-UCG------CCGCCGU----CAUGCGgAGc -5'
7011 5' -60 NC_001875.2 + 22950 0.7 0.463777
Target:  5'- -aCCG-GGCGGCGcCAuGUACGCCUCc -3'
miRNA:   3'- cgGGCuUCGCCGCcGU-CAUGCGGAGc -5'
7011 5' -60 NC_001875.2 + 25927 0.69 0.519826
Target:  5'- uGCCCGAGuuuuucGUGGUGGCGccGCGCC-CGc -3'
miRNA:   3'- -CGGGCUU------CGCCGCCGUcaUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 26238 0.82 0.09348
Target:  5'- -aCCGggGCauGGCGGC-GUACGCCUCGu -3'
miRNA:   3'- cgGGCuuCG--CCGCCGuCAUGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 29023 0.69 0.529436
Target:  5'- uCCCGAuuuGCGGCGGCgacGGgcuaaacgACGCgCUCa -3'
miRNA:   3'- cGGGCUu--CGCCGCCG---UCa-------UGCG-GAGc -5'
7011 5' -60 NC_001875.2 + 32558 0.68 0.608177
Target:  5'- cGCCgaGGAGCGGCugcaGCAGUGCcgcgcgcaCCUCGa -3'
miRNA:   3'- -CGGg-CUUCGCCGc---CGUCAUGc-------GGAGC- -5'
7011 5' -60 NC_001875.2 + 33808 0.71 0.436957
Target:  5'- uGCCCGucGGCgcacGGCGcGCGGgggaaaaACGCCUCGu -3'
miRNA:   3'- -CGGGCu-UCG----CCGC-CGUCa------UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 33862 0.69 0.529436
Target:  5'- cGCaCCGugcGCGGcCGGCAGaacgGCGUUUCGg -3'
miRNA:   3'- -CG-GGCuu-CGCC-GCCGUCa---UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 39166 0.69 0.53911
Target:  5'- gGCCgCGAGGCGGgcCGGCGGUuGCGUggCGu -3'
miRNA:   3'- -CGG-GCUUCGCC--GCCGUCA-UGCGgaGC- -5'
7011 5' -60 NC_001875.2 + 43583 0.66 0.716365
Target:  5'- cGUCUGAcgaguacggcggcAGCGGCGGCGc-GCGCCg-- -3'
miRNA:   3'- -CGGGCU-------------UCGCCGCCGUcaUGCGGagc -5'
7011 5' -60 NC_001875.2 + 45230 0.66 0.74611
Target:  5'- cGCgCGAAcaGGCGGCGcGU-CGCCUUGu -3'
miRNA:   3'- -CGgGCUUcgCCGCCGU-CAuGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 48384 0.68 0.618163
Target:  5'- cGUCCGAcGCGGCGaCAGgugcCGgCUCGg -3'
miRNA:   3'- -CGGGCUuCGCCGCcGUCau--GCgGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.