Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7011 | 5' | -60 | NC_001875.2 | + | 13722 | 0.67 | 0.63816 |
Target: 5'- cGCCCGccuuGGCGGCaauGCGGuUGCGCaggCGg -3' miRNA: 3'- -CGGGCu---UCGCCGc--CGUC-AUGCGga-GC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 25927 | 0.69 | 0.519826 |
Target: 5'- uGCCCGAGuuuuucGUGGUGGCGccGCGCC-CGc -3' miRNA: 3'- -CGGGCUU------CGCCGCCGUcaUGCGGaGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 80638 | 0.69 | 0.519826 |
Target: 5'- cGCUCGAcgGGCGGCGcCAGaaccGCGCCgUCGu -3' miRNA: 3'- -CGGGCU--UCGCCGCcGUCa---UGCGG-AGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 39166 | 0.69 | 0.53911 |
Target: 5'- gGCCgCGAGGCGGgcCGGCGGUuGCGUggCGu -3' miRNA: 3'- -CGG-GCUUCGCC--GCCGUCA-UGCGgaGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 79114 | 0.68 | 0.578345 |
Target: 5'- gGCCaCGGcguuGuCGGCGGCGG-GCGCCgCGg -3' miRNA: 3'- -CGG-GCUu---C-GCCGCCGUCaUGCGGaGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 110680 | 0.68 | 0.588261 |
Target: 5'- uGCCgaaaaGAAGCGGCcGCGGaggGCGCCgCGu -3' miRNA: 3'- -CGGg----CUUCGCCGcCGUCa--UGCGGaGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 85874 | 0.68 | 0.598207 |
Target: 5'- -gCCGcAGCGGCGGCucUGCGCUaUCGc -3' miRNA: 3'- cgGGCuUCGCCGCCGucAUGCGG-AGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 113603 | 0.68 | 0.618163 |
Target: 5'- cGUUCGAGuCGGCGGCGGgcCGCggCGg -3' miRNA: 3'- -CGGGCUUcGCCGCCGUCauGCGgaGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 48384 | 0.68 | 0.618163 |
Target: 5'- cGUCCGAcGCGGCGaCAGgugcCGgCUCGg -3' miRNA: 3'- -CGGGCUuCGCCGCcGUCau--GCgGAGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 122066 | 0.7 | 0.50082 |
Target: 5'- uGCCCGGAuguGCcGCGuGCGcUugGCCUCGg -3' miRNA: 3'- -CGGGCUU---CGcCGC-CGUcAugCGGAGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 103119 | 0.7 | 0.482127 |
Target: 5'- gGCUCGcuuGGCGGCGGCGGcGC-CCUUc -3' miRNA: 3'- -CGGGCu--UCGCCGCCGUCaUGcGGAGc -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 22950 | 0.7 | 0.463777 |
Target: 5'- -aCCG-GGCGGCGcCAuGUACGCCUCc -3' miRNA: 3'- cgGGCuUCGCCGCcGU-CAUGCGGAGc -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 26238 | 0.82 | 0.09348 |
Target: 5'- -aCCGggGCauGGCGGC-GUACGCCUCGu -3' miRNA: 3'- cgGGCuuCG--CCGCCGuCAUGCGGAGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 130916 | 0.75 | 0.264021 |
Target: 5'- cGUCCGGucacggcAGUGGCGGCGGUuuGCGCCg-- -3' miRNA: 3'- -CGGGCU-------UCGCCGCCGUCA--UGCGGagc -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 11571 | 0.74 | 0.277157 |
Target: 5'- -gCCGAAGCGGgGaGCGGUguGCGCCUaCGu -3' miRNA: 3'- cgGGCUUCGCCgC-CGUCA--UGCGGA-GC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 84334 | 0.74 | 0.290146 |
Target: 5'- aCCCGGAGCGGCGaguggcggaGCGGcUGCGCCg-- -3' miRNA: 3'- cGGGCUUCGCCGC---------CGUC-AUGCGGagc -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 68558 | 0.73 | 0.353702 |
Target: 5'- -gCCGcGGCGGCGGCGGUcgcgcaccgcgugGCGCCg-- -3' miRNA: 3'- cgGGCuUCGCCGCCGUCA-------------UGCGGagc -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 113379 | 0.72 | 0.365336 |
Target: 5'- uGCCCGGucAGCGGCGcGCGauucgcgcgccacgcGgaccGCGCCUCGc -3' miRNA: 3'- -CGGGCU--UCGCCGC-CGU---------------Ca---UGCGGAGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 124548 | 0.71 | 0.428217 |
Target: 5'- -gUCGggGuCGGCGGCGGgguCGCUUUGg -3' miRNA: 3'- cgGGCuuC-GCCGCCGUCau-GCGGAGC- -5' |
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7011 | 5' | -60 | NC_001875.2 | + | 84400 | 0.71 | 0.436957 |
Target: 5'- aGCCgGAgcuucGGCGGCGGCGcGUAuaggUGCCaUCGg -3' miRNA: 3'- -CGGgCU-----UCGCCGCCGU-CAU----GCGG-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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