miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 5' -60 NC_001875.2 + 113784 1.1 0.000992
Target:  5'- cGCCCGAAGCGGCGGCAGUACGCCUCGu -3'
miRNA:   3'- -CGGGCUUCGCCGCCGUCAUGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 26238 0.82 0.09348
Target:  5'- -aCCGggGCauGGCGGC-GUACGCCUCGu -3'
miRNA:   3'- cgGGCuuCG--CCGCCGuCAUGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 130916 0.75 0.264021
Target:  5'- cGUCCGGucacggcAGUGGCGGCGGUuuGCGCCg-- -3'
miRNA:   3'- -CGGGCU-------UCGCCGCCGUCA--UGCGGagc -5'
7011 5' -60 NC_001875.2 + 11571 0.74 0.277157
Target:  5'- -gCCGAAGCGGgGaGCGGUguGCGCCUaCGu -3'
miRNA:   3'- cgGGCUUCGCCgC-CGUCA--UGCGGA-GC- -5'
7011 5' -60 NC_001875.2 + 57682 0.74 0.290146
Target:  5'- cGUCCaagcuGGCGGCGGCGGgcgccGCGcCCUCGa -3'
miRNA:   3'- -CGGGcu---UCGCCGCCGUCa----UGC-GGAGC- -5'
7011 5' -60 NC_001875.2 + 84334 0.74 0.290146
Target:  5'- aCCCGGAGCGGCGaguggcggaGCGGcUGCGCCg-- -3'
miRNA:   3'- cGGGCUUCGCCGC---------CGUC-AUGCGGagc -5'
7011 5' -60 NC_001875.2 + 19935 0.73 0.353702
Target:  5'- gGCCCGuacacgGAGCGGcCGGCgcgacGGUccggccgGCGCCUCGc -3'
miRNA:   3'- -CGGGC------UUCGCC-GCCG-----UCA-------UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 68558 0.73 0.353702
Target:  5'- -gCCGcGGCGGCGGCGGUcgcgcaccgcgugGCGCCg-- -3'
miRNA:   3'- cgGGCuUCGCCGCCGUCA-------------UGCGGagc -5'
7011 5' -60 NC_001875.2 + 13523 0.72 0.362208
Target:  5'- aCCUGcAGCGcGCGGCcGgcCGCCUCGa -3'
miRNA:   3'- cGGGCuUCGC-CGCCGuCauGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 113379 0.72 0.365336
Target:  5'- uGCCCGGucAGCGGCGcGCGauucgcgcgccacgcGgaccGCGCCUCGc -3'
miRNA:   3'- -CGGGCU--UCGCCGC-CGU---------------Ca---UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 66107 0.72 0.402631
Target:  5'- gGCCCGcgcGGCgGGCGGCgAGgcgGCGCCgcccgCGg -3'
miRNA:   3'- -CGGGCu--UCG-CCGCCG-UCa--UGCGGa----GC- -5'
7011 5' -60 NC_001875.2 + 124548 0.71 0.428217
Target:  5'- -gUCGggGuCGGCGGCGGgguCGCUUUGg -3'
miRNA:   3'- cgGGCuuC-GCCGCCGUCau-GCGGAGC- -5'
7011 5' -60 NC_001875.2 + 84400 0.71 0.436957
Target:  5'- aGCCgGAgcuucGGCGGCGGCGcGUAuaggUGCCaUCGg -3'
miRNA:   3'- -CGGgCU-----UCGCCGCCGU-CAU----GCGG-AGC- -5'
7011 5' -60 NC_001875.2 + 33808 0.71 0.436957
Target:  5'- uGCCCGucGGCgcacGGCGcGCGGgggaaaaACGCCUCGu -3'
miRNA:   3'- -CGGGCu-UCG----CCGC-CGUCa------UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 61598 0.71 0.449364
Target:  5'- gGCUCGGGcGcCGGCGGCgcuucgggcugugucGGcgGCGCCUCGg -3'
miRNA:   3'- -CGGGCUU-C-GCCGCCG---------------UCa-UGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 22950 0.7 0.463777
Target:  5'- -aCCG-GGCGGCGcCAuGUACGCCUCc -3'
miRNA:   3'- cgGGCuUCGCCGCcGU-CAUGCGGAGc -5'
7011 5' -60 NC_001875.2 + 103119 0.7 0.482127
Target:  5'- gGCUCGcuuGGCGGCGGCGGcGC-CCUUc -3'
miRNA:   3'- -CGGGCu--UCGCCGCCGUCaUGcGGAGc -5'
7011 5' -60 NC_001875.2 + 122066 0.7 0.50082
Target:  5'- uGCCCGGAuguGCcGCGuGCGcUugGCCUCGg -3'
miRNA:   3'- -CGGGCUU---CGcCGC-CGUcAugCGGAGC- -5'
7011 5' -60 NC_001875.2 + 114564 0.7 0.510287
Target:  5'- cGCUCcaguGCGGCGGauuGUGCGCgUCGg -3'
miRNA:   3'- -CGGGcuu-CGCCGCCgu-CAUGCGgAGC- -5'
7011 5' -60 NC_001875.2 + 22578 0.7 0.510287
Target:  5'- cGCCCGG-GC-GCGGCGcGUugGCCggcCGg -3'
miRNA:   3'- -CGGGCUuCGcCGCCGU-CAugCGGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.