miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7012 5' -57.8 NC_001875.2 + 127986 0.68 0.715088
Target:  5'- cGGCggaucgucaCAUGUUGgaggcUGCGGCCGCGcCGGc -3'
miRNA:   3'- -UCGa--------GUACGACa----GCGUCGGCGCaGCC- -5'
7012 5' -57.8 NC_001875.2 + 125342 0.71 0.543224
Target:  5'- cGGCcagCGUGUUGgCGCGGCacucCGCGUUGGg -3'
miRNA:   3'- -UCGa--GUACGACaGCGUCG----GCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 117258 0.67 0.744495
Target:  5'- cGUUCAguCUGUCGCuGCCGCGgcCGa -3'
miRNA:   3'- uCGAGUacGACAGCGuCGGCGCa-GCc -5'
7012 5' -57.8 NC_001875.2 + 114150 1.09 0.001613
Target:  5'- cAGCUCAUGCUGUCGCAGCCGCGUCGGc -3'
miRNA:   3'- -UCGAGUACGACAGCGUCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 113333 0.71 0.543224
Target:  5'- gGGCuuuUCGUGCggcgGgucgggCGCGGCUGCGUCGc -3'
miRNA:   3'- -UCG---AGUACGa---Ca-----GCGUCGGCGCAGCc -5'
7012 5' -57.8 NC_001875.2 + 102237 0.66 0.817954
Target:  5'- aAGCuUCGUGUUGUCagaAGCCGCGg--- -3'
miRNA:   3'- -UCG-AGUACGACAGcg-UCGGCGCagcc -5'
7012 5' -57.8 NC_001875.2 + 91875 0.67 0.773023
Target:  5'- gGGCgCcUGCUGgUGCGGCgGCGggUCGGg -3'
miRNA:   3'- -UCGaGuACGACaGCGUCGgCGC--AGCC- -5'
7012 5' -57.8 NC_001875.2 + 90880 0.77 0.25682
Target:  5'- cGaaCGUGCUGgcCGgGGCCGCGUCGGg -3'
miRNA:   3'- uCgaGUACGACa-GCgUCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 86229 0.67 0.754115
Target:  5'- cGGCUgGUGUUGgagugcugCGC-GCCGgaGUCGGg -3'
miRNA:   3'- -UCGAgUACGACa-------GCGuCGGCg-CAGCC- -5'
7012 5' -57.8 NC_001875.2 + 85800 0.69 0.638303
Target:  5'- cGUUCAUGUUGUgaagcauuuccgcggCGcCAGCUGCGUgGGc -3'
miRNA:   3'- uCGAGUACGACA---------------GC-GUCGGCGCAgCC- -5'
7012 5' -57.8 NC_001875.2 + 81351 0.67 0.723988
Target:  5'- cGCUgGUGCcGcgCGCacgcgccGGCCGCGUCGc -3'
miRNA:   3'- uCGAgUACGaCa-GCG-------UCGGCGCAGCc -5'
7012 5' -57.8 NC_001875.2 + 77028 0.7 0.593478
Target:  5'- uGUUCggGCUcg-GCAGCCGCGUCGcGg -3'
miRNA:   3'- uCGAGuaCGAcagCGUCGGCGCAGC-C- -5'
7012 5' -57.8 NC_001875.2 + 73850 0.66 0.782295
Target:  5'- uGUgugCGUGgUGUUGCGGCCcGUcagGUCGGa -3'
miRNA:   3'- uCGa--GUACgACAGCGUCGG-CG---CAGCC- -5'
7012 5' -57.8 NC_001875.2 + 71127 0.74 0.378499
Target:  5'- uGCUgugGCUGggcggccucagCGCGGCCGCGUUGGg -3'
miRNA:   3'- uCGAguaCGACa----------GCGUCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 67017 0.66 0.791432
Target:  5'- gGGCUCAaGCgcaagCGCAGCCGCa---- -3'
miRNA:   3'- -UCGAGUaCGaca--GCGUCGGCGcagcc -5'
7012 5' -57.8 NC_001875.2 + 64901 0.71 0.513736
Target:  5'- cGCUCA-GCUGUCGC-GCCuCGUUGa -3'
miRNA:   3'- uCGAGUaCGACAGCGuCGGcGCAGCc -5'
7012 5' -57.8 NC_001875.2 + 62593 0.66 0.817954
Target:  5'- cGGCcCGUGCcGUCGggcaagucggcaCAGCgCGCGUCGc -3'
miRNA:   3'- -UCGaGUACGaCAGC------------GUCG-GCGCAGCc -5'
7012 5' -57.8 NC_001875.2 + 61597 0.66 0.782295
Target:  5'- cGGCUCggGCgccGgcggCGCuucgGGCUGUGUCGGc -3'
miRNA:   3'- -UCGAGuaCGa--Ca---GCG----UCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 59931 0.71 0.513736
Target:  5'- cGCUCAucagUGCcgUGUCGCGGCUG-GUCGa -3'
miRNA:   3'- uCGAGU----ACG--ACAGCGUCGGCgCAGCc -5'
7012 5' -57.8 NC_001875.2 + 50336 0.66 0.817954
Target:  5'- gAGCUgGUGgUGUCgGCGucGuuGgCGUCGGg -3'
miRNA:   3'- -UCGAgUACgACAG-CGU--CggC-GCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.