miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 14686 0.66 0.801976
Target:  5'- --aCGCUUgcgaGCGCGAC-CUGCGCGa -3'
miRNA:   3'- gugGUGAAaca-CGCGCUGcGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 120634 0.66 0.801976
Target:  5'- gGCCuucuCguccgGCGCGGCGUCGUGCu -3'
miRNA:   3'- gUGGu---GaaacaCGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 72116 0.66 0.801976
Target:  5'- aACCACUgcuccaGCGCGA-GCCGCuGCu -3'
miRNA:   3'- gUGGUGAaaca--CGCGCUgCGGCG-CGc -5'
7014 5' -57.6 NC_001875.2 + 102518 0.66 0.801976
Target:  5'- gCGCCGCaguguccgUUUGUGCGCaACaaCGCGCa -3'
miRNA:   3'- -GUGGUG--------AAACACGCGcUGcgGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 30228 0.66 0.801976
Target:  5'- gACCACUUUGUa--CGugGUCGCGUu -3'
miRNA:   3'- gUGGUGAAACAcgcGCugCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 91100 0.67 0.793014
Target:  5'- gCugCACUUggcaaUGUGCaGCaGCGuCUGCGCGu -3'
miRNA:   3'- -GugGUGAA-----ACACG-CGcUGC-GGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 95295 0.67 0.793014
Target:  5'- uGCaCACggggacgGUGCGCGccaGCGCCGUuugGCGa -3'
miRNA:   3'- gUG-GUGaaa----CACGCGC---UGCGGCG---CGC- -5'
7014 5' -57.6 NC_001875.2 + 101158 0.67 0.793014
Target:  5'- gACCACguggccGUGCGCGugGCgcuggucaauuaCGUGCc -3'
miRNA:   3'- gUGGUGaaa---CACGCGCugCG------------GCGCGc -5'
7014 5' -57.6 NC_001875.2 + 12176 0.67 0.793014
Target:  5'- aGCCGC--UGUGCGC--CGCCGC-CGa -3'
miRNA:   3'- gUGGUGaaACACGCGcuGCGGCGcGC- -5'
7014 5' -57.6 NC_001875.2 + 62380 0.67 0.793014
Target:  5'- aCGCgCACgUUGUuuaGCGugGCCgGCGCGc -3'
miRNA:   3'- -GUG-GUGaAACAcg-CGCugCGG-CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 107833 0.67 0.793014
Target:  5'- -cCCGCgcccgGUGCgccuuGCGACGC-GCGCGa -3'
miRNA:   3'- guGGUGaaa--CACG-----CGCUGCGgCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 114468 0.67 0.790296
Target:  5'- cCGCCACgUUGgcgguagagaUGUGCGGCagcacucugacgcgGUCGCGCGg -3'
miRNA:   3'- -GUGGUGaAAC----------ACGCGCUG--------------CGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 97988 0.67 0.783907
Target:  5'- gGCCGCgcacgGUGCGCGACGUguuguuugaCGagGCGu -3'
miRNA:   3'- gUGGUGaaa--CACGCGCUGCG---------GCg-CGC- -5'
7014 5' -57.6 NC_001875.2 + 57511 0.67 0.783907
Target:  5'- -cCCACUUUuugacgcccGUGCugucCGGCGCCuGCGCGc -3'
miRNA:   3'- guGGUGAAA---------CACGc---GCUGCGG-CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 97464 0.67 0.783907
Target:  5'- aACCGCUgccgUUGUacggcagcaacuGCGUcucuuGCGCCGCGCGc -3'
miRNA:   3'- gUGGUGA----AACA------------CGCGc----UGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 99702 0.67 0.783907
Target:  5'- uCGCCGCcgUUGaGCGCuAUGCgGCGCu -3'
miRNA:   3'- -GUGGUGa-AACaCGCGcUGCGgCGCGc -5'
7014 5' -57.6 NC_001875.2 + 89886 0.67 0.783907
Target:  5'- uUAUCAaguuggacgUGUaCGUGGCGCCGCGCa -3'
miRNA:   3'- -GUGGUgaa------ACAcGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 32785 0.67 0.783907
Target:  5'- --gCGCggcGUGgGCgGGCGCCGCGCc -3'
miRNA:   3'- gugGUGaaaCACgCG-CUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 22901 0.67 0.783907
Target:  5'- gGCCGCauccUGcUGCGCaACGCCGUGUc -3'
miRNA:   3'- gUGGUGaa--AC-ACGCGcUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 11810 0.67 0.774665
Target:  5'- gGCCGCgucgGUGUuuGugGUCGCGCc -3'
miRNA:   3'- gUGGUGaaa-CACGcgCugCGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.