miRNA display CGI


Results 21 - 40 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 11186 0.69 0.636118
Target:  5'- gUugCGCgccgUUGUggaGCaCGACGCCGCGCc -3'
miRNA:   3'- -GugGUGa---AACA---CGcGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 11810 0.67 0.774665
Target:  5'- gGCCGCgucgGUGUuuGugGUCGCGCc -3'
miRNA:   3'- gUGGUGaaa-CACGcgCugCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 11942 0.7 0.585261
Target:  5'- gCGCCgACUgUGcGCGCGACcgGCgGCGCGu -3'
miRNA:   3'- -GUGG-UGAaACaCGCGCUG--CGgCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 12176 0.67 0.793014
Target:  5'- aGCCGC--UGUGCGC--CGCCGC-CGa -3'
miRNA:   3'- gUGGUGaaACACGCGcuGCGGCGcGC- -5'
7014 5' -57.6 NC_001875.2 + 12305 0.69 0.636118
Target:  5'- aCGCCGCc--GUGUGCGugGUcaaCGCGCc -3'
miRNA:   3'- -GUGGUGaaaCACGCGCugCG---GCGCGc -5'
7014 5' -57.6 NC_001875.2 + 13740 0.8 0.161683
Target:  5'- cCACCACUc---GCGCGGCGUCGCGCa -3'
miRNA:   3'- -GUGGUGAaacaCGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 14686 0.66 0.801976
Target:  5'- --aCGCUUgcgaGCGCGAC-CUGCGCGa -3'
miRNA:   3'- gugGUGAAaca-CGCGCUGcGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 14920 0.71 0.545132
Target:  5'- -uCUACgucaUUGUGCGCcaccCGCCGCGCGc -3'
miRNA:   3'- guGGUGa---AACACGCGcu--GCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 17031 0.71 0.565104
Target:  5'- -uCCAagUUUGUGCGgGA-GCCGCGCa -3'
miRNA:   3'- guGGUg-AAACACGCgCUgCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 17326 0.69 0.666654
Target:  5'- aGCUGCUggcgGuUGCGC--CGCCGCGCGa -3'
miRNA:   3'- gUGGUGAaa--C-ACGCGcuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 17486 0.66 0.827916
Target:  5'- gGCCAgcaagUUG-GCG-GACGCCGCGUc -3'
miRNA:   3'- gUGGUga---AACaCGCgCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 18141 0.73 0.419211
Target:  5'- aCGCCACUgugaGUuacuggugcggcgcGCGCGACGCCGCcacugugGCGg -3'
miRNA:   3'- -GUGGUGAaa--CA--------------CGCGCUGCGGCG-------CGC- -5'
7014 5' -57.6 NC_001875.2 + 18198 0.71 0.565104
Target:  5'- gCGCgACUUUGauuaCGCGGCGCCGuCGCc -3'
miRNA:   3'- -GUGgUGAAACac--GCGCUGCGGC-GCGc -5'
7014 5' -57.6 NC_001875.2 + 18471 0.69 0.636118
Target:  5'- aCACC-UUUUuUGCGCcGCGCCGCaGCGa -3'
miRNA:   3'- -GUGGuGAAAcACGCGcUGCGGCG-CGC- -5'
7014 5' -57.6 NC_001875.2 + 19018 0.68 0.716876
Target:  5'- aACgCGCUUUgcacGUGCGCGGCGUuuuuaaGUGCGg -3'
miRNA:   3'- gUG-GUGAAA----CACGCGCUGCGg-----CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 19431 0.71 0.545132
Target:  5'- cUACCGCaUUGUGCuGCG--GCCGCGCc -3'
miRNA:   3'- -GUGGUGaAACACG-CGCugCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 19865 0.69 0.656492
Target:  5'- gGCCGCgucgcgGCGCgGGCGCCGUuuGCGa -3'
miRNA:   3'- gUGGUGaaaca-CGCG-CUGCGGCG--CGC- -5'
7014 5' -57.6 NC_001875.2 + 21239 0.68 0.69694
Target:  5'- aCACCAgUUggcgaagcUGguccagGCGCGcGCGCgGCGCGg -3'
miRNA:   3'- -GUGGUgAA--------ACa-----CGCGC-UGCGgCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 21682 0.7 0.575162
Target:  5'- aCGCCGCccgacgaGCGCGACGCgGUGCu -3'
miRNA:   3'- -GUGGUGaaaca--CGCGCUGCGgCGCGc -5'
7014 5' -57.6 NC_001875.2 + 21825 0.66 0.809913
Target:  5'- gCGCCACUggucgagcUGCGCGcGCGucaacgccaccgaCCGCGCGu -3'
miRNA:   3'- -GUGGUGAaac-----ACGCGC-UGC-------------GGCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.