miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 879 0.7 0.595393
Target:  5'- gACCACUUUGgGCGCGAgaaCgGCGCa -3'
miRNA:   3'- gUGGUGAAACaCGCGCUgc-GgCGCGc -5'
7014 5' -57.6 NC_001875.2 + 2275 0.68 0.695937
Target:  5'- gGCCAUgUUGacgucgugaUGCGCgcgcgccGugGCCGCGCGc -3'
miRNA:   3'- gUGGUGaAAC---------ACGCG-------CugCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 3004 0.71 0.555092
Target:  5'- gGCgGgUUgaaGUGCGCGuCGCCGUGCa -3'
miRNA:   3'- gUGgUgAAa--CACGCGCuGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 3143 0.67 0.774665
Target:  5'- -cCCGCUgcgcgGaCGCGGCGUCGgGCGg -3'
miRNA:   3'- guGGUGAaaca-C-GCGCUGCGGCgCGC- -5'
7014 5' -57.6 NC_001875.2 + 3650 0.72 0.458732
Target:  5'- aGCCGCUggcgUGUGUGCuGCGCgcuUGCGCGc -3'
miRNA:   3'- gUGGUGAa---ACACGCGcUGCG---GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 5815 0.66 0.810786
Target:  5'- gCGCCACUUUGaUG-GCGAggauaGCUGCGaCGu -3'
miRNA:   3'- -GUGGUGAAAC-ACgCGCUg----CGGCGC-GC- -5'
7014 5' -57.6 NC_001875.2 + 7015 0.66 0.836219
Target:  5'- gCGCCAgUUgcUGgacguaaGCGagGugGCCGCGCGc -3'
miRNA:   3'- -GUGGUgAA--ACa------CGCg-CugCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 7043 0.67 0.755811
Target:  5'- cCGCCACgcugGUGCaaGACauaauCCGCGCGc -3'
miRNA:   3'- -GUGGUGaaa-CACGcgCUGc----GGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 7077 0.68 0.736524
Target:  5'- aCGCCACcggccUGUGCGCaGACauGCagCGCGCGc -3'
miRNA:   3'- -GUGGUGaa---ACACGCG-CUG--CG--GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 7387 0.74 0.372023
Target:  5'- gGCCACgcgGuUGCGCGACGCgGuCGCa -3'
miRNA:   3'- gUGGUGaaaC-ACGCGCUGCGgC-GCGc -5'
7014 5' -57.6 NC_001875.2 + 7490 0.68 0.716876
Target:  5'- uGCCGCUcauUUG-GCugauCGGCGCCGUGCu -3'
miRNA:   3'- gUGGUGA---AACaCGc---GCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 7824 0.68 0.69694
Target:  5'- uCACCcaauCgUUUGUGaaGCGugGUCGCGCGc -3'
miRNA:   3'- -GUGGu---G-AAACACg-CGCugCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 8489 0.74 0.363985
Target:  5'- aCACCACgccggGCGCcguccgugugGGCGCCGCGCa -3'
miRNA:   3'- -GUGGUGaaacaCGCG----------CUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 9365 0.66 0.827916
Target:  5'- gCAUCGCaaaggUGcUGCGCG-CGCCGCaGCc -3'
miRNA:   3'- -GUGGUGaa---AC-ACGCGCuGCGGCG-CGc -5'
7014 5' -57.6 NC_001875.2 + 9627 0.76 0.311148
Target:  5'- uGCUaaGCUgcGUGCGCG-CGCCGUGCGu -3'
miRNA:   3'- gUGG--UGAaaCACGCGCuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 9684 0.73 0.42184
Target:  5'- aCACCGCUccgUUggggcucgccgucGUGCGCGccggccGCGCCGCGCc -3'
miRNA:   3'- -GUGGUGA---AA-------------CACGCGC------UGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 10398 0.66 0.810786
Target:  5'- cCGCCGCgccgUG-GCGCGGCacCCGCuGCa -3'
miRNA:   3'- -GUGGUGaa--ACaCGCGCUGc-GGCG-CGc -5'
7014 5' -57.6 NC_001875.2 + 10442 0.73 0.449573
Target:  5'- gCGCagcaGCUUUGacgcgGCGCGGCGgCGCGCu -3'
miRNA:   3'- -GUGg---UGAAACa----CGCGCUGCgGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 10671 0.68 0.686887
Target:  5'- aCugCACUUg--GCGCaGGCGCUGcCGCa -3'
miRNA:   3'- -GugGUGAAacaCGCG-CUGCGGC-GCGc -5'
7014 5' -57.6 NC_001875.2 + 10875 0.7 0.585261
Target:  5'- gGCCGCgucgGUG-GCGcUGCCGCGCa -3'
miRNA:   3'- gUGGUGaaa-CACgCGCuGCGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.