miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 39072 0.72 0.496318
Target:  5'- gGCCAU--UGUGCgccGCGGCGUCGUGCu -3'
miRNA:   3'- gUGGUGaaACACG---CGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 36802 0.73 0.440516
Target:  5'- uCugCACg--GUGCGCGuuacGCGCCGCgGCa -3'
miRNA:   3'- -GugGUGaaaCACGCGC----UGCGGCG-CGc -5'
7014 5' -57.6 NC_001875.2 + 10442 0.73 0.449573
Target:  5'- gCGCagcaGCUUUGacgcgGCGCGGCGgCGCGCu -3'
miRNA:   3'- -GUGg---UGAAACa----CGCGCUGCgGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 45687 0.72 0.458732
Target:  5'- gCACCACguccGUcaucucgccGCGCG-CGCCGCGCa -3'
miRNA:   3'- -GUGGUGaaa-CA---------CGCGCuGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 3650 0.72 0.458732
Target:  5'- aGCCGCUggcgUGUGUGCuGCGCgcuUGCGCGc -3'
miRNA:   3'- gUGGUGAa---ACACGCGcUGCG---GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 107553 0.72 0.46799
Target:  5'- cCGCC-CUaUGgacaaGCGCGGCGCCGuCGCa -3'
miRNA:   3'- -GUGGuGAaACa----CGCGCUGCGGC-GCGc -5'
7014 5' -57.6 NC_001875.2 + 66371 0.72 0.477342
Target:  5'- gGCCGCUugccUUGcUGCGUGGCcaGCUGCGCa -3'
miRNA:   3'- gUGGUGA----AAC-ACGCGCUG--CGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 48509 0.72 0.486786
Target:  5'- gACUAUUUUG-GCGCGcCGCCcgGCGCGc -3'
miRNA:   3'- gUGGUGAAACaCGCGCuGCGG--CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 118025 0.72 0.486786
Target:  5'- gUACCGCgaccaGUGCGaCGgcaACGCCGCGCc -3'
miRNA:   3'- -GUGGUGaaa--CACGC-GC---UGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 18141 0.73 0.419211
Target:  5'- aCGCCACUgugaGUuacuggugcggcgcGCGCGACGCCGCcacugugGCGg -3'
miRNA:   3'- -GUGGUGAaa--CA--------------CGCGCUGCGGCG-------CGC- -5'
7014 5' -57.6 NC_001875.2 + 111016 0.74 0.388456
Target:  5'- aCACCAgUUUGgucgacaagcgcUGCGaCGACGcCCGCGCa -3'
miRNA:   3'- -GUGGUgAAAC------------ACGC-GCUGC-GGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 31699 0.74 0.38018
Target:  5'- cCGCCGCU---UGCGCGcCGCCgGCGCa -3'
miRNA:   3'- -GUGGUGAaacACGCGCuGCGG-CGCGc -5'
7014 5' -57.6 NC_001875.2 + 74253 0.83 0.104252
Target:  5'- aCACCACgcuucUGgacaGCGCGACGCCGCGCc -3'
miRNA:   3'- -GUGGUGaa---ACa---CGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 37098 0.83 0.112762
Target:  5'- cCGCCGCgugggUGUgcggGCGCGGCGCCGCGCc -3'
miRNA:   3'- -GUGGUGaa---ACA----CGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 51945 0.8 0.178839
Target:  5'- gCGCUACUUUGgGCGCGACGUgccgcaCGCGCGc -3'
miRNA:   3'- -GUGGUGAAACaCGCGCUGCG------GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 41704 0.76 0.283671
Target:  5'- gGCCAgggcguaUGCGCGGCGCUGCGCGg -3'
miRNA:   3'- gUGGUgaaac--ACGCGCUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 66053 0.75 0.325628
Target:  5'- gCACCGC-----GCGcCGACGCCGCGCGc -3'
miRNA:   3'- -GUGGUGaaacaCGC-GCUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 62495 0.75 0.348274
Target:  5'- aCGCCGCUgacUGCGCGuuuCGUCGCGUGu -3'
miRNA:   3'- -GUGGUGAaacACGCGCu--GCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 8489 0.74 0.363985
Target:  5'- aCACCACgccggGCGCcguccgugugGGCGCCGCGCa -3'
miRNA:   3'- -GUGGUGaaacaCGCG----------CUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 7387 0.74 0.372023
Target:  5'- gGCCACgcgGuUGCGCGACGCgGuCGCa -3'
miRNA:   3'- gUGGUGaaaC-ACGCGCUGCGgC-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.