miRNA display CGI


Results 1 - 20 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 102566 0.65 0.841114
Target:  5'- gACCGCgccccgccgGCGCGgucgGCgGCCGCGCa -3'
miRNA:   3'- gUGGUGaaaca----CGCGC----UG-CGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 33465 0.66 0.827916
Target:  5'- gGCCAgUggucgaaaGUG-GCG-CGCCGCGCGc -3'
miRNA:   3'- gUGGUgAaa------CACgCGCuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 30228 0.66 0.801976
Target:  5'- gACCACUUUGUa--CGugGUCGCGUu -3'
miRNA:   3'- gUGGUGAAACAcgcGCugCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 17486 0.66 0.827916
Target:  5'- gGCCAgcaagUUG-GCG-GACGCCGCGUc -3'
miRNA:   3'- gUGGUga---AACaCGCgCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 48840 0.66 0.827076
Target:  5'- gCGCCGCUUcaaGCccgccggcgacgaGCGGCGCCGCGa- -3'
miRNA:   3'- -GUGGUGAAacaCG-------------CGCUGCGGCGCgc -5'
7014 5' -57.6 NC_001875.2 + 54948 0.66 0.836219
Target:  5'- cCGCCcCUUUGcGCGCGcguuUGCCGgaCGCGu -3'
miRNA:   3'- -GUGGuGAAACaCGCGCu---GCGGC--GCGC- -5'
7014 5' -57.6 NC_001875.2 + 39310 0.66 0.810786
Target:  5'- gCugCACaccGUGCcgGCGGCGUgCGCGCGc -3'
miRNA:   3'- -GugGUGaaaCACG--CGCUGCG-GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 36656 0.66 0.810786
Target:  5'- gGCCGCgucGUGCGCGcugaGCUcgggGCGCGu -3'
miRNA:   3'- gUGGUGaaaCACGCGCug--CGG----CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 66024 0.66 0.827916
Target:  5'- aGCaGCUgcaaGCGCuuGGCGCCGCGCa -3'
miRNA:   3'- gUGgUGAaacaCGCG--CUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 44531 0.66 0.836219
Target:  5'- gGCCACcaUG-GCGUaaucgacguugGGCaGCCGCGCGu -3'
miRNA:   3'- gUGGUGaaACaCGCG-----------CUG-CGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 85344 0.66 0.810786
Target:  5'- cCGCCGCgaac-GC-CGACGCCGUgGCGg -3'
miRNA:   3'- -GUGGUGaaacaCGcGCUGCGGCG-CGC- -5'
7014 5' -57.6 NC_001875.2 + 37894 0.66 0.810786
Target:  5'- aGCgGCUUgcugGCGCGGCacuggcaCCGCGCGu -3'
miRNA:   3'- gUGgUGAAaca-CGCGCUGc------GGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 128767 0.66 0.810786
Target:  5'- aCGCCguggGCgaccccgGCGCGcCGCUGCGCGc -3'
miRNA:   3'- -GUGG----UGaaaca--CGCGCuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 25921 0.66 0.819436
Target:  5'- gGCCAaugcccgaguUUUUcGUG-GUGGCGCCGCGCc -3'
miRNA:   3'- gUGGU----------GAAA-CACgCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 7015 0.66 0.836219
Target:  5'- gCGCCAgUUgcUGgacguaaGCGagGugGCCGCGCGc -3'
miRNA:   3'- -GUGGUgAA--ACa------CGCg-CugCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 68556 0.66 0.810786
Target:  5'- cCGCCGCg----GCgGCGGCgGUCGCGCa -3'
miRNA:   3'- -GUGGUGaaacaCG-CGCUG-CGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 10398 0.66 0.810786
Target:  5'- cCGCCGCgccgUG-GCGCGGCacCCGCuGCa -3'
miRNA:   3'- -GUGGUGaa--ACaCGCGCUGc-GGCG-CGc -5'
7014 5' -57.6 NC_001875.2 + 110063 0.66 0.827916
Target:  5'- aACCcg--UGUcGCGCgcagaGACGCUGCGCGu -3'
miRNA:   3'- gUGGugaaACA-CGCG-----CUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 40076 0.66 0.810786
Target:  5'- gCACUACgacgagGcCGCGGCGCUGaCGCGc -3'
miRNA:   3'- -GUGGUGaaaca-C-GCGCUGCGGC-GCGC- -5'
7014 5' -57.6 NC_001875.2 + 110812 0.66 0.819436
Target:  5'- aCGCCGCgcagGUGgaCGCGcugguGCGCCGCGg- -3'
miRNA:   3'- -GUGGUGaaa-CAC--GCGC-----UGCGGCGCgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.