miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 118091 1.09 0.00187
Target:  5'- cCACCACUUUGUGCGCGACGCCGCGCGa -3'
miRNA:   3'- -GUGGUGAAACACGCGCUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 74253 0.83 0.104252
Target:  5'- aCACCACgcuucUGgacaGCGCGACGCCGCGCc -3'
miRNA:   3'- -GUGGUGaa---ACa---CGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 37098 0.83 0.112762
Target:  5'- cCGCCGCgugggUGUgcggGCGCGGCGCCGCGCc -3'
miRNA:   3'- -GUGGUGaa---ACA----CGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 63274 0.81 0.135201
Target:  5'- gCGCCACgcgGUGCGCGAccgcCGCCGcCGCGg -3'
miRNA:   3'- -GUGGUGaaaCACGCGCU----GCGGC-GCGC- -5'
7014 5' -57.6 NC_001875.2 + 89096 0.8 0.157632
Target:  5'- gCGCCGCUcaccaUGCGCGuCGCCGCGCGc -3'
miRNA:   3'- -GUGGUGAaac--ACGCGCuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 13740 0.8 0.161683
Target:  5'- cCACCACUc---GCGCGGCGUCGCGCa -3'
miRNA:   3'- -GUGGUGAaacaCGCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 98927 0.8 0.170068
Target:  5'- gCGCCGgUUgcgcGUGCGCGACGCgCGCGUGu -3'
miRNA:   3'- -GUGGUgAAa---CACGCGCUGCG-GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 51945 0.8 0.178839
Target:  5'- gCGCUACUUUGgGCGCGACGUgccgcaCGCGCGc -3'
miRNA:   3'- -GUGGUGAAACaCGCGCUGCG------GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 41704 0.76 0.283671
Target:  5'- gGCCAgggcguaUGCGCGGCGCUGCGCGg -3'
miRNA:   3'- gUGGUgaaac--ACGCGCUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 86131 0.76 0.297163
Target:  5'- gGCCAUcggcaGUGCGCGGCGC-GCGCGg -3'
miRNA:   3'- gUGGUGaaa--CACGCGCUGCGgCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 113674 0.76 0.304094
Target:  5'- cCGCCACa--GUG-GCGGCGUCGCGCGc -3'
miRNA:   3'- -GUGGUGaaaCACgCGCUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 50488 0.76 0.304094
Target:  5'- gGCCgGCgc-GUGCGCGcggcaccagcGCGCCGCGCGg -3'
miRNA:   3'- gUGG-UGaaaCACGCGC----------UGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 9627 0.76 0.311148
Target:  5'- uGCUaaGCUgcGUGCGCG-CGCCGUGCGu -3'
miRNA:   3'- gUGG--UGAaaCACGCGCuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 66053 0.75 0.325628
Target:  5'- gCACCGC-----GCGcCGACGCCGCGCGc -3'
miRNA:   3'- -GUGGUGaaacaCGC-GCUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 119895 0.75 0.333053
Target:  5'- gCGCCGCcg-GUcGCGCGcacagucggcGCGCCGCGCGc -3'
miRNA:   3'- -GUGGUGaaaCA-CGCGC----------UGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 87435 0.75 0.340602
Target:  5'- cCACCaACUUgcaGUGCGCGcGCGCCGaCGUGc -3'
miRNA:   3'- -GUGG-UGAAa--CACGCGC-UGCGGC-GCGC- -5'
7014 5' -57.6 NC_001875.2 + 77249 0.75 0.340602
Target:  5'- aUACCGCgccgUGgGCGCGcCGCCGgGCGa -3'
miRNA:   3'- -GUGGUGaa--ACaCGCGCuGCGGCgCGC- -5'
7014 5' -57.6 NC_001875.2 + 62495 0.75 0.348274
Target:  5'- aCGCCGCUgacUGCGCGuuuCGUCGCGUGu -3'
miRNA:   3'- -GUGGUGAaacACGCGCu--GCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 24276 0.74 0.363985
Target:  5'- ---aGC-UUGUGCGaCGGCGCCGCGCu -3'
miRNA:   3'- guggUGaAACACGC-GCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 8489 0.74 0.363985
Target:  5'- aCACCACgccggGCGCcguccgugugGGCGCCGCGCa -3'
miRNA:   3'- -GUGGUGaaacaCGCG----------CUGCGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.