miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 3' -56.1 NC_001875.2 + 30061 0.66 0.874617
Target:  5'- gCCGGCCGUu---UGCaCGUCGCCGAa -3'
miRNA:   3'- aGGUUGGCGcuucACGaGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 17834 0.66 0.870155
Target:  5'- gCCAugCGCGAgggcgccgaaaacgaGGUGCa-GUCgGCCGAg -3'
miRNA:   3'- aGGUugGCGCU---------------UCACGagCAG-CGGUU- -5'
7015 3' -56.1 NC_001875.2 + 93930 0.66 0.867135
Target:  5'- gUCCAACacgaCGCGGugccAGUGC-CG-CGCCAGc -3'
miRNA:   3'- -AGGUUG----GCGCU----UCACGaGCaGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 114566 0.66 0.859435
Target:  5'- cUCCAguGCgGCGGAuuGUGCgCGUCGgCAAa -3'
miRNA:   3'- -AGGU--UGgCGCUU--CACGaGCAGCgGUU- -5'
7015 3' -56.1 NC_001875.2 + 654 0.66 0.857083
Target:  5'- gCCAACauaaacugcaaacaCGcCGggGUGCg-GUCGCCAGu -3'
miRNA:   3'- aGGUUG--------------GC-GCuuCACGagCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 129929 0.66 0.851522
Target:  5'- aUUGGCgGCGGcaUGCUCGUgGCCAAa -3'
miRNA:   3'- aGGUUGgCGCUucACGAGCAgCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 12204 0.66 0.851522
Target:  5'- cCUGGCCGUaAAGUGC-CGaUCGCCGu -3'
miRNA:   3'- aGGUUGGCGcUUCACGaGC-AGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 66062 0.66 0.843402
Target:  5'- gCCGacGCCGCGcgcGUGCUCGcccagcCGCCGg -3'
miRNA:   3'- aGGU--UGGCGCuu-CACGAGCa-----GCGGUu -5'
7015 3' -56.1 NC_001875.2 + 119561 0.67 0.835085
Target:  5'- gCCGGCUGCacacgguggccuGcAAGUGCUUGUUGUCAAa -3'
miRNA:   3'- aGGUUGGCG------------C-UUCACGAGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 29713 0.67 0.826576
Target:  5'- aCCAcGCCGUGAAGuUGCUCacggGCCAAg -3'
miRNA:   3'- aGGU-UGGCGCUUC-ACGAGcag-CGGUU- -5'
7015 3' -56.1 NC_001875.2 + 86720 0.67 0.826576
Target:  5'- cCCGGCCGacac-UGCUCGUCGCaCAu -3'
miRNA:   3'- aGGUUGGCgcuucACGAGCAGCG-GUu -5'
7015 3' -56.1 NC_001875.2 + 3000 0.67 0.809017
Target:  5'- uUCgGGCgGguUGAAGUGCgCGUCGCCGu -3'
miRNA:   3'- -AGgUUGgC--GCUUCACGaGCAGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 118020 0.67 0.799984
Target:  5'- uUCCGguACCGCGAccAGUGCgaCGgcaaCGCCGc -3'
miRNA:   3'- -AGGU--UGGCGCU--UCACGa-GCa---GCGGUu -5'
7015 3' -56.1 NC_001875.2 + 55091 0.67 0.790794
Target:  5'- gCCAG-CGCGuccuuGUGCUCGUCcCCGAa -3'
miRNA:   3'- aGGUUgGCGCuu---CACGAGCAGcGGUU- -5'
7015 3' -56.1 NC_001875.2 + 41010 0.68 0.781456
Target:  5'- -aCGGCCGCGuggucGUGCUCaGUCGCg-- -3'
miRNA:   3'- agGUUGGCGCuu---CACGAG-CAGCGguu -5'
7015 3' -56.1 NC_001875.2 + 81846 0.68 0.771979
Target:  5'- cCCAACCGCGAcaAGcGCcgCGUCaGCUAc -3'
miRNA:   3'- aGGUUGGCGCU--UCaCGa-GCAG-CGGUu -5'
7015 3' -56.1 NC_001875.2 + 106009 0.68 0.762373
Target:  5'- cCCGACUucaucuggGCGuugcAGUGCUCGgcgggCGCCGAg -3'
miRNA:   3'- aGGUUGG--------CGCu---UCACGAGCa----GCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 17728 0.68 0.762373
Target:  5'- gCCAaaacACCGU--GGUGCUgugCGUCGCCAu -3'
miRNA:   3'- aGGU----UGGCGcuUCACGA---GCAGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 45920 0.68 0.752647
Target:  5'- gCCGACUuuGCuc--UGCUCGUCGCCAGa -3'
miRNA:   3'- aGGUUGG--CGcuucACGAGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 122251 0.68 0.732876
Target:  5'- -gCGGCCGCGAaugGGUGaUCGaCGCCGAu -3'
miRNA:   3'- agGUUGGCGCU---UCACgAGCaGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.