miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 3' -56.1 NC_001875.2 + 129981 0.69 0.702565
Target:  5'- -gCGGCgGCGGcaUGCUCGUgGCCAAa -3'
miRNA:   3'- agGUUGgCGCUucACGAGCAgCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 129929 0.66 0.851522
Target:  5'- aUUGGCgGCGGcaUGCUCGUgGCCAAa -3'
miRNA:   3'- aGGUUGgCGCUucACGAGCAgCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 125464 0.68 0.732876
Target:  5'- cCgGGCCGCGcGGUGCccgacgacgacaUCGUgGCCGAg -3'
miRNA:   3'- aGgUUGGCGCuUCACG------------AGCAgCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 122251 0.68 0.732876
Target:  5'- -gCGGCCGCGAaugGGUGaUCGaCGCCGAu -3'
miRNA:   3'- agGUUGGCGCU---UCACgAGCaGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 120764 1.07 0.003082
Target:  5'- gUCCAACCGCGAAGUGCUCGUCGCCAAa -3'
miRNA:   3'- -AGGUUGGCGCUUCACGAGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 119561 0.67 0.835085
Target:  5'- gCCGGCUGCacacgguggccuGcAAGUGCUUGUUGUCAAa -3'
miRNA:   3'- aGGUUGGCG------------C-UUCACGAGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 118020 0.67 0.799984
Target:  5'- uUCCGguACCGCGAccAGUGCgaCGgcaaCGCCGc -3'
miRNA:   3'- -AGGU--UGGCGCU--UCACGa-GCa---GCGGUu -5'
7015 3' -56.1 NC_001875.2 + 114566 0.66 0.859435
Target:  5'- cUCCAguGCgGCGGAuuGUGCgCGUCGgCAAa -3'
miRNA:   3'- -AGGU--UGgCGCUU--CACGaGCAGCgGUU- -5'
7015 3' -56.1 NC_001875.2 + 110274 0.73 0.487844
Target:  5'- gCUGGCCGCGGAGcgcgcgggcUGCccCGUCGCCGAg -3'
miRNA:   3'- aGGUUGGCGCUUC---------ACGa-GCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 106009 0.68 0.762373
Target:  5'- cCCGACUucaucuggGCGuugcAGUGCUCGgcgggCGCCGAg -3'
miRNA:   3'- aGGUUGG--------CGCu---UCACGAGCa----GCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 101330 0.69 0.682034
Target:  5'- gUCguGCaCGUGgcGUGCuUUGUCGCCAAa -3'
miRNA:   3'- -AGguUG-GCGCuuCACG-AGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 94256 0.72 0.557706
Target:  5'- gCCGGCCGCGGc--GCUCG-CGCCGg -3'
miRNA:   3'- aGGUUGGCGCUucaCGAGCaGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 93930 0.66 0.867135
Target:  5'- gUCCAACacgaCGCGGugccAGUGC-CG-CGCCAGc -3'
miRNA:   3'- -AGGUUG----GCGCU----UCACGaGCaGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 86720 0.67 0.826576
Target:  5'- cCCGGCCGacac-UGCUCGUCGCaCAu -3'
miRNA:   3'- aGGUUGGCgcuucACGAGCAGCG-GUu -5'
7015 3' -56.1 NC_001875.2 + 82983 0.69 0.702565
Target:  5'- uUCC--UCGCGgcGccGCUCGUCGCCGg -3'
miRNA:   3'- -AGGuuGGCGCuuCa-CGAGCAGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 81846 0.68 0.771979
Target:  5'- cCCAACCGCGAcaAGcGCcgCGUCaGCUAc -3'
miRNA:   3'- aGGUUGGCGCU--UCaCGa-GCAG-CGGUu -5'
7015 3' -56.1 NC_001875.2 + 72124 0.7 0.619707
Target:  5'- cUCCAG-CGCGAGccgcUGCUCGcUCGCCAGc -3'
miRNA:   3'- -AGGUUgGCGCUUc---ACGAGC-AGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 71885 0.74 0.413462
Target:  5'- cCCAGCCGCGAAua-CUCGUCGaCCAGc -3'
miRNA:   3'- aGGUUGGCGCUUcacGAGCAGC-GGUU- -5'
7015 3' -56.1 NC_001875.2 + 69425 0.75 0.370669
Target:  5'- uUCCA--CGCGAAGUGCUUGaCGCCGg -3'
miRNA:   3'- -AGGUugGCGCUUCACGAGCaGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 67707 0.69 0.702565
Target:  5'- gCCGGCgGCcuGAGGggGUUCGUUGCCGAg -3'
miRNA:   3'- aGGUUGgCG--CUUCa-CGAGCAGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.