miRNA display CGI


Results 21 - 40 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 5' -60 NC_001875.2 + 11936 0.68 0.548546
Target:  5'- cGCGGCGCGCcGaCuGuGCGCGCGaCCg -3'
miRNA:   3'- uUGCUGCGCGuCcGuCuCGCGUGC-GG- -5'
7016 5' -60 NC_001875.2 + 11986 0.69 0.508478
Target:  5'- cGACGGCguuggGCGCGGGUGugguggcGAGCGCG-GCCa -3'
miRNA:   3'- -UUGCUG-----CGCGUCCGU-------CUCGCGUgCGG- -5'
7016 5' -60 NC_001875.2 + 12420 0.69 0.528861
Target:  5'- cGCG-CGCcaaGCAGGCcguuGcGUGCGCGCCg -3'
miRNA:   3'- uUGCuGCG---CGUCCGu---CuCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 12782 0.69 0.499845
Target:  5'- -cCGGgGCGCcGcGCAcauGCGCACGCCg -3'
miRNA:   3'- uuGCUgCGCGuC-CGUcu-CGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 12963 0.67 0.608749
Target:  5'- -uCGuCGCgGCGGGCGuGGGCucCGCGCCg -3'
miRNA:   3'- uuGCuGCG-CGUCCGU-CUCGc-GUGCGG- -5'
7016 5' -60 NC_001875.2 + 13617 0.68 0.58854
Target:  5'- uGCGAuCGUcuccaaugugGCAGGCGGuugccGCGC-CGCCg -3'
miRNA:   3'- uUGCU-GCG----------CGUCCGUCu----CGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 13731 0.66 0.70363
Target:  5'- uGGCGGCaaugcgguuGCGCAGGCGGuccuccauguccauGGUgguaauguaaggaaGCGCGCCc -3'
miRNA:   3'- -UUGCUG---------CGCGUCCGUC--------------UCG--------------CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 13892 0.68 0.538673
Target:  5'- -uCGACcaaaccaaaCGC-GGCGGcGCGCACGCCg -3'
miRNA:   3'- uuGCUGc--------GCGuCCGUCuCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 15628 0.68 0.575468
Target:  5'- cGACGACcuGUacuuccacccugagGCGGuGCAGA-CGCACGCCa -3'
miRNA:   3'- -UUGCUG--CG--------------CGUC-CGUCUcGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 16072 0.71 0.408938
Target:  5'- uGugGACGCaCAcGGCGccgguuucGGCGCACGCCg -3'
miRNA:   3'- -UugCUGCGcGU-CCGUc-------UCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 16911 0.77 0.164186
Target:  5'- cGACGACgGCGCGGGCcucguguuuGAGCGCaucggcgcguuGCGCCa -3'
miRNA:   3'- -UUGCUG-CGCGUCCGu--------CUCGCG-----------UGCGG- -5'
7016 5' -60 NC_001875.2 + 17272 0.68 0.555491
Target:  5'- -cCGACGCGCAcaauccgccgcacuGGagcgucguGAGCGC-CGCCg -3'
miRNA:   3'- uuGCUGCGCGU--------------CCgu------CUCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 18161 0.68 0.582499
Target:  5'- uGCGGCGCGCGcgacgccgccacuguGGCGGugccGGCGgGCGUa -3'
miRNA:   3'- uUGCUGCGCGU---------------CCGUC----UCGCgUGCGg -5'
7016 5' -60 NC_001875.2 + 18437 0.68 0.558476
Target:  5'- cGCGAgGCGCGGuccGCGuGGCGCgcgaaucgcGCGCCg -3'
miRNA:   3'- uUGCUgCGCGUC---CGUcUCGCG---------UGCGG- -5'
7016 5' -60 NC_001875.2 + 18688 0.66 0.699648
Target:  5'- aAACGGCGCGCGcGCcGGcGUGCACauuaacguGCCg -3'
miRNA:   3'- -UUGCUGCGCGUcCGuCU-CGCGUG--------CGG- -5'
7016 5' -60 NC_001875.2 + 18750 0.66 0.65944
Target:  5'- cACGGCgGCuaAGGCGcuGAcGCGCGuCGCCa -3'
miRNA:   3'- uUGCUG-CGcgUCCGU--CU-CGCGU-GCGG- -5'
7016 5' -60 NC_001875.2 + 19121 0.69 0.518145
Target:  5'- cGACGAgGCcacgcucGUGGGCcaAGCGCugGCCa -3'
miRNA:   3'- -UUGCUgCG-------CGUCCGucUCGCGugCGG- -5'
7016 5' -60 NC_001875.2 + 19124 0.67 0.638158
Target:  5'- cGCGACGCGCcuaccacGGCGGcgccgucAGCGaCACGUUu -3'
miRNA:   3'- uUGCUGCGCGu------CCGUC-------UCGC-GUGCGG- -5'
7016 5' -60 NC_001875.2 + 19344 0.82 0.073438
Target:  5'- cGugGGCGUGguGcGCGGAGCGUugGCCg -3'
miRNA:   3'- -UugCUGCGCguC-CGUCUCGCGugCGG- -5'
7016 5' -60 NC_001875.2 + 20012 0.67 0.648299
Target:  5'- -cCGGCucGCGCAGccgucacGCGGAGCaGCcagGCGCCg -3'
miRNA:   3'- uuGCUG--CGCGUC-------CGUCUCG-CG---UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.