miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 5' -60 NC_001875.2 + 1379 0.69 0.509442
Target:  5'- gAACGGCGCGUgcuaGCGGuGCGUcagcgGCGCCc -3'
miRNA:   3'- -UUGCUGCGCGuc--CGUCuCGCG-----UGCGG- -5'
7016 5' -60 NC_001875.2 + 3069 0.71 0.408081
Target:  5'- cAGCGGCGCGCcgGGGUcgcccacGGcGUGCACGCg -3'
miRNA:   3'- -UUGCUGCGCG--UCCG-------UCuCGCGUGCGg -5'
7016 5' -60 NC_001875.2 + 3415 0.74 0.249214
Target:  5'- uGGCGGaGUGCGGGUcccaAGAGCGCugGUCg -3'
miRNA:   3'- -UUGCUgCGCGUCCG----UCUCGCGugCGG- -5'
7016 5' -60 NC_001875.2 + 4425 0.67 0.639172
Target:  5'- cACGGCG-GCAuGCuGA-CGCGCGCCg -3'
miRNA:   3'- uUGCUGCgCGUcCGuCUcGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 5802 0.66 0.699648
Target:  5'- -cCGGCuGCGCauaAGGUAGuagacugccAGCGC-CGCCg -3'
miRNA:   3'- uuGCUG-CGCG---UCCGUC---------UCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 5934 0.75 0.220975
Target:  5'- uAGCGcCGCGCAGGUGG-GCGCG-GCCu -3'
miRNA:   3'- -UUGCuGCGCGUCCGUCuCGCGUgCGG- -5'
7016 5' -60 NC_001875.2 + 5983 0.72 0.351772
Target:  5'- -cCGACG-GCAGGCccAGCGCGUGCCg -3'
miRNA:   3'- uuGCUGCgCGUCCGucUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 6483 0.71 0.383734
Target:  5'- uACGGCGCcCAacGCGGAGUGCcGCGCCa -3'
miRNA:   3'- uUGCUGCGcGUc-CGUCUCGCG-UGCGG- -5'
7016 5' -60 NC_001875.2 + 6971 0.67 0.618883
Target:  5'- cACGGCGCGCugcuugacagcGGGCAucuuugcuucGAcGUGgCGCGCCa -3'
miRNA:   3'- uUGCUGCGCG-----------UCCGU----------CU-CGC-GUGCGG- -5'
7016 5' -60 NC_001875.2 + 7072 0.7 0.452244
Target:  5'- cGGCGACgccaccggccuguGCGCAGacauGCAGcgcGCGCugGCCg -3'
miRNA:   3'- -UUGCUG-------------CGCGUC----CGUCu--CGCGugCGG- -5'
7016 5' -60 NC_001875.2 + 7400 0.66 0.656404
Target:  5'- cGCGACGCGgucgcaaaacauauUGGGCccaacgacgAGGGCaacuGCGCGCCg -3'
miRNA:   3'- uUGCUGCGC--------------GUCCG---------UCUCG----CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 8304 0.74 0.249214
Target:  5'- cACGGCcaGCaGCGGGUuGGGUGCACGCCc -3'
miRNA:   3'- uUGCUG--CG-CGUCCGuCUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 8475 0.66 0.709583
Target:  5'- cACGuCGCGCGGaaacaccacGCcGGGCGCcguccguguggGCGCCg -3'
miRNA:   3'- uUGCuGCGCGUC---------CGuCUCGCG-----------UGCGG- -5'
7016 5' -60 NC_001875.2 + 9613 0.71 0.400422
Target:  5'- cAACGACGCGUuuGuGCuaagcugcGuGCGCGCGCCg -3'
miRNA:   3'- -UUGCUGCGCGu-C-CGu-------CuCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 9918 0.69 0.494125
Target:  5'- cGACuGGCGCGCGGGCcgcaaguauucuagcGGugcuGCcCACGCCg -3'
miRNA:   3'- -UUG-CUGCGCGUCCG---------------UCu---CGcGUGCGG- -5'
7016 5' -60 NC_001875.2 + 9981 0.7 0.4441
Target:  5'- uGACGGCGUGCAGGCcAGuauaaaacuGCGCugaacCGCUu -3'
miRNA:   3'- -UUGCUGCGCGUCCG-UCu--------CGCGu----GCGG- -5'
7016 5' -60 NC_001875.2 + 10863 0.74 0.26132
Target:  5'- gGACGACGCGguGGCcgcgucGGuGGCGC-UGCCg -3'
miRNA:   3'- -UUGCUGCGCguCCG------UC-UCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 10991 0.68 0.548546
Target:  5'- cGACGAaGCGCu-GCAG-GCGCGCGUg -3'
miRNA:   3'- -UUGCUgCGCGucCGUCuCGCGUGCGg -5'
7016 5' -60 NC_001875.2 + 11055 0.74 0.271983
Target:  5'- cACG-CGCGCAaacugcagcaguuuGGCGuGGCGCGCGCCc -3'
miRNA:   3'- uUGCuGCGCGU--------------CCGUcUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 11152 0.68 0.578479
Target:  5'- -cCGACGgGgAGGCGuaccGCGCGCGCa -3'
miRNA:   3'- uuGCUGCgCgUCCGUcu--CGCGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.