miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 5' -60 NC_001875.2 + 35463 0.74 0.26132
Target:  5'- -uUGACGCGCAGGaccuGcAGCGCauguGCGCCa -3'
miRNA:   3'- uuGCUGCGCGUCCgu--C-UCGCG----UGCGG- -5'
7016 5' -60 NC_001875.2 + 37090 0.75 0.241597
Target:  5'- gGACGACaccgccgcguggguGUGCGGGCGcGGCGCcGCGCCg -3'
miRNA:   3'- -UUGCUG--------------CGCGUCCGUcUCGCG-UGCGG- -5'
7016 5' -60 NC_001875.2 + 38208 0.75 0.243337
Target:  5'- cACGACGUGCAGGac--GUGCACGUCa -3'
miRNA:   3'- uUGCUGCGCGUCCgucuCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 117923 0.75 0.243337
Target:  5'- aGACGGCaaGCuGCAGGcCGGcGUGCGCGCCg -3'
miRNA:   3'- -UUGCUG--CG-CGUCC-GUCuCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 85300 0.74 0.248621
Target:  5'- gGGCGGCgcggGCGCGGGCAuugccgcGGGCGCucuCGCCc -3'
miRNA:   3'- -UUGCUG----CGCGUCCGU-------CUCGCGu--GCGG- -5'
7016 5' -60 NC_001875.2 + 8304 0.74 0.249214
Target:  5'- cACGGCcaGCaGCGGGUuGGGUGCACGCCc -3'
miRNA:   3'- uUGCUG--CG-CGUCCGuCUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 3415 0.74 0.249214
Target:  5'- uGGCGGaGUGCGGGUcccaAGAGCGCugGUCg -3'
miRNA:   3'- -UUGCUgCGCGUCCG----UCUCGCGugCGG- -5'
7016 5' -60 NC_001875.2 + 37577 0.74 0.249214
Target:  5'- aGugGAUGCGCcGGCGcGAGCGcCGCgGCCg -3'
miRNA:   3'- -UugCUGCGCGuCCGU-CUCGC-GUG-CGG- -5'
7016 5' -60 NC_001875.2 + 72553 0.74 0.255208
Target:  5'- cAACgGGCGCuGCGGGCGcGGGCGCggGCGCUg -3'
miRNA:   3'- -UUG-CUGCG-CGUCCGU-CUCGCG--UGCGG- -5'
7016 5' -60 NC_001875.2 + 5934 0.75 0.220975
Target:  5'- uAGCGcCGCGCAGGUGG-GCGCG-GCCu -3'
miRNA:   3'- -UUGCuGCGCGUCCGUCuCGCGUgCGG- -5'
7016 5' -60 NC_001875.2 + 111881 0.76 0.200387
Target:  5'- cGGCGAgGCGCcGGcCGGAccGUGCGCGCCg -3'
miRNA:   3'- -UUGCUgCGCGuCC-GUCU--CGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 111111 0.77 0.181489
Target:  5'- uGCGGCGUGCAcGGCAGcaauGCGUcacgGCGCCa -3'
miRNA:   3'- uUGCUGCGCGU-CCGUCu---CGCG----UGCGG- -5'
7016 5' -60 NC_001875.2 + 62475 0.88 0.030231
Target:  5'- gGACGGCGCGCA-GCGG-GCGCACGCCg -3'
miRNA:   3'- -UUGCUGCGCGUcCGUCuCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 19344 0.82 0.073438
Target:  5'- cGugGGCGUGguGcGCGGAGCGUugGCCg -3'
miRNA:   3'- -UugCUGCGCguC-CGUCUCGCGugCGG- -5'
7016 5' -60 NC_001875.2 + 110810 0.81 0.093137
Target:  5'- cAACGcCGCGCAGGUGGAcGCGCugguGCGCCg -3'
miRNA:   3'- -UUGCuGCGCGUCCGUCU-CGCG----UGCGG- -5'
7016 5' -60 NC_001875.2 + 42745 0.81 0.093137
Target:  5'- cGGCGACGCGCAuGguGAGCGgCGCGCUc -3'
miRNA:   3'- -UUGCUGCGCGUcCguCUCGC-GUGCGG- -5'
7016 5' -60 NC_001875.2 + 66040 0.79 0.124023
Target:  5'- uGGCGcCGCGCAGGCAc--CGCGCGCCg -3'
miRNA:   3'- -UUGCuGCGCGUCCGUcucGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 38294 0.79 0.130577
Target:  5'- cGACGACGCGguGGC-GAGCGCcgacaAgGCCg -3'
miRNA:   3'- -UUGCUGCGCguCCGuCUCGCG-----UgCGG- -5'
7016 5' -60 NC_001875.2 + 16911 0.77 0.164186
Target:  5'- cGACGACgGCGCGGGCcucguguuuGAGCGCaucggcgcguuGCGCCa -3'
miRNA:   3'- -UUGCUG-CGCGUCCGu--------CUCGCG-----------UGCGG- -5'
7016 5' -60 NC_001875.2 + 131511 0.77 0.170067
Target:  5'- uGCGGCGCGCGGuGCAGcGGCuggaagcggcgcaaaGCGCGCCc -3'
miRNA:   3'- uUGCUGCGCGUC-CGUC-UCG---------------CGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.