miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 5' -60 NC_001875.2 + 129623 0.66 0.689658
Target:  5'- --gGACGUGaaggAGGCAGAGCuuGCacacgagucgaACGCCa -3'
miRNA:   3'- uugCUGCGCg---UCCGUCUCG--CG-----------UGCGG- -5'
7016 5' -60 NC_001875.2 + 7400 0.66 0.656404
Target:  5'- cGCGACGCGgucgcaaaacauauUGGGCccaacgacgAGGGCaacuGCGCGCCg -3'
miRNA:   3'- uUGCUGCGC--------------GUCCG---------UCUCG----CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 42487 0.66 0.679621
Target:  5'- cGCGcACGCGCAcGCcGucguccGCGUGCGCCg -3'
miRNA:   3'- uUGC-UGCGCGUcCGuCu-----CGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 42332 0.66 0.669545
Target:  5'- cAGCGGCcC-CAGGCGGaAGCGCAguCGCa -3'
miRNA:   3'- -UUGCUGcGcGUCCGUC-UCGCGU--GCGg -5'
7016 5' -60 NC_001875.2 + 62556 0.66 0.669545
Target:  5'- aAACGuuGUGCGGGUGGAcuuGCcGC-CGCCa -3'
miRNA:   3'- -UUGCugCGCGUCCGUCU---CG-CGuGCGG- -5'
7016 5' -60 NC_001875.2 + 37412 0.66 0.669545
Target:  5'- gAACGGCGCGUggaagAGGCcguGGCGCA-GUCg -3'
miRNA:   3'- -UUGCUGCGCG-----UCCGuc-UCGCGUgCGG- -5'
7016 5' -60 NC_001875.2 + 110100 0.66 0.669545
Target:  5'- cGCcACGCGCGGcCAGAGCaagaaCGCGCUg -3'
miRNA:   3'- uUGcUGCGCGUCcGUCUCGc----GUGCGG- -5'
7016 5' -60 NC_001875.2 + 116910 0.66 0.679621
Target:  5'- uAGCcGCGCGC-GGCGGguGGCGCACa-- -3'
miRNA:   3'- -UUGcUGCGCGuCCGUC--UCGCGUGcgg -5'
7016 5' -60 NC_001875.2 + 68560 0.66 0.679621
Target:  5'- cGCGGCG-GC-GGCGGucGCGCaccgcgugGCGCCg -3'
miRNA:   3'- uUGCUGCgCGuCCGUCu-CGCG--------UGCGG- -5'
7016 5' -60 NC_001875.2 + 26552 0.66 0.669545
Target:  5'- -uCGGCGUGCuGGCAGAuuuccGUGCACa-- -3'
miRNA:   3'- uuGCUGCGCGuCCGUCU-----CGCGUGcgg -5'
7016 5' -60 NC_001875.2 + 40861 0.66 0.65944
Target:  5'- --aGACGCGCAccGCGGgcgccauccuGGUGCACGCg -3'
miRNA:   3'- uugCUGCGCGUc-CGUC----------UCGCGUGCGg -5'
7016 5' -60 NC_001875.2 + 69628 0.66 0.669545
Target:  5'- -uUGGCGCGCgAGGUGGA-CGC-CGUCg -3'
miRNA:   3'- uuGCUGCGCG-UCCGUCUcGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 40605 0.66 0.689658
Target:  5'- uACGGCGC-CGuGguGGGCGCcaccacGCGCCu -3'
miRNA:   3'- uUGCUGCGcGUcCguCUCGCG------UGCGG- -5'
7016 5' -60 NC_001875.2 + 40833 0.66 0.679621
Target:  5'- -cCGGC-CGUGGGCAagacGGCGCuCGCCa -3'
miRNA:   3'- uuGCUGcGCGUCCGUc---UCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 39269 0.66 0.669545
Target:  5'- cGCGACGCG-GGGCGGcuucUGCcCGCCg -3'
miRNA:   3'- uUGCUGCGCgUCCGUCuc--GCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 58027 0.66 0.65944
Target:  5'- uACGACuacaaCGUGGGCGGcGCGC-UGCCg -3'
miRNA:   3'- uUGCUGc----GCGUCCGUCuCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 22198 0.66 0.709583
Target:  5'- aAAUGACGcCGCguuGGGCAGcGCGUuuCGCa -3'
miRNA:   3'- -UUGCUGC-GCG---UCCGUCuCGCGu-GCGg -5'
7016 5' -60 NC_001875.2 + 100551 0.66 0.669545
Target:  5'- aAACGGCGCGU-GGUAaccaaUGCACGCCu -3'
miRNA:   3'- -UUGCUGCGCGuCCGUcuc--GCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 91162 0.66 0.689658
Target:  5'- uGACGGuCGCGCAauuGGaCGGAaugucgccGCGCAacaGCCg -3'
miRNA:   3'- -UUGCU-GCGCGU---CC-GUCU--------CGCGUg--CGG- -5'
7016 5' -60 NC_001875.2 + 47971 0.66 0.65944
Target:  5'- cGACGAggaacCGUGCGaGCGGGGCGUcgaGCCg -3'
miRNA:   3'- -UUGCU-----GCGCGUcCGUCUCGCGug-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.