miRNA display CGI


Results 1 - 20 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 5' -60 NC_001875.2 + 123323 1.08 0.001152
Target:  5'- uAACGACGCGCAGGCAGAGCGCACGCCc -3'
miRNA:   3'- -UUGCUGCGCGUCCGUCUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 62475 0.88 0.030231
Target:  5'- gGACGGCGCGCA-GCGG-GCGCACGCCg -3'
miRNA:   3'- -UUGCUGCGCGUcCGUCuCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 19344 0.82 0.073438
Target:  5'- cGugGGCGUGguGcGCGGAGCGUugGCCg -3'
miRNA:   3'- -UugCUGCGCguC-CGUCUCGCGugCGG- -5'
7016 5' -60 NC_001875.2 + 54363 0.82 0.075412
Target:  5'- -cCGGCGCGuUGGGC-GAGCGCACGCCu -3'
miRNA:   3'- uuGCUGCGC-GUCCGuCUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 42745 0.81 0.093137
Target:  5'- cGGCGACGCGCAuGguGAGCGgCGCGCUc -3'
miRNA:   3'- -UUGCUGCGCGUcCguCUCGC-GUGCGG- -5'
7016 5' -60 NC_001875.2 + 110810 0.81 0.093137
Target:  5'- cAACGcCGCGCAGGUGGAcGCGCugguGCGCCg -3'
miRNA:   3'- -UUGCuGCGCGUCCGUCU-CGCG----UGCGG- -5'
7016 5' -60 NC_001875.2 + 66040 0.79 0.124023
Target:  5'- uGGCGcCGCGCAGGCAc--CGCGCGCCg -3'
miRNA:   3'- -UUGCuGCGCGUCCGUcucGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 38294 0.79 0.130577
Target:  5'- cGACGACGCGguGGC-GAGCGCcgacaAgGCCg -3'
miRNA:   3'- -UUGCUGCGCguCCGuCUCGCG-----UgCGG- -5'
7016 5' -60 NC_001875.2 + 94475 0.78 0.137449
Target:  5'- cAGCGGCGCGCGcguucGCAcGAGCGCGCgGCCg -3'
miRNA:   3'- -UUGCUGCGCGUc----CGU-CUCGCGUG-CGG- -5'
7016 5' -60 NC_001875.2 + 124724 0.78 0.144652
Target:  5'- aAGCGGCGCGU-GGCGGucaaugucggcAGCGCGCGCUg -3'
miRNA:   3'- -UUGCUGCGCGuCCGUC-----------UCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 46499 0.78 0.148381
Target:  5'- cACGGCGUcggcguucgcgGCGGGCGGGGCGagaGCGCCc -3'
miRNA:   3'- uUGCUGCG-----------CGUCCGUCUCGCg--UGCGG- -5'
7016 5' -60 NC_001875.2 + 111190 0.78 0.152197
Target:  5'- --gGGCGCGCuGGGC--GGCGCGCGCCg -3'
miRNA:   3'- uugCUGCGCG-UCCGucUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 94320 0.77 0.160098
Target:  5'- --gGGCGCGUccAGGCAGGGCGCGuCGUCc -3'
miRNA:   3'- uugCUGCGCG--UCCGUCUCGCGU-GCGG- -5'
7016 5' -60 NC_001875.2 + 16911 0.77 0.164186
Target:  5'- cGACGACgGCGCGGGCcucguguuuGAGCGCaucggcgcguuGCGCCa -3'
miRNA:   3'- -UUGCUG-CGCGUCCGu--------CUCGCG-----------UGCGG- -5'
7016 5' -60 NC_001875.2 + 131511 0.77 0.170067
Target:  5'- uGCGGCGCGCGGuGCAGcGGCuggaagcggcgcaaaGCGCGCCc -3'
miRNA:   3'- uUGCUGCGCGUC-CGUC-UCG---------------CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 55720 0.77 0.172645
Target:  5'- uGACGugGCGCuGGaaaaGGAGCGCuacggcGCGCCc -3'
miRNA:   3'- -UUGCugCGCGuCCg---UCUCGCG------UGCGG- -5'
7016 5' -60 NC_001875.2 + 76760 0.77 0.172645
Target:  5'- cAAgGACGCGCuGGCcGAGUGCuacaGCGCCa -3'
miRNA:   3'- -UUgCUGCGCGuCCGuCUCGCG----UGCGG- -5'
7016 5' -60 NC_001875.2 + 111111 0.77 0.181489
Target:  5'- uGCGGCGUGCAcGGCAGcaauGCGUcacgGCGCCa -3'
miRNA:   3'- uUGCUGCGCGU-CCGUCu---CGCG----UGCGG- -5'
7016 5' -60 NC_001875.2 + 93251 0.76 0.185599
Target:  5'- -uCGACGCGCAGcuggcccguGUAGAGCaggauggGCACGCCg -3'
miRNA:   3'- uuGCUGCGCGUC---------CGUCUCG-------CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 111881 0.76 0.200387
Target:  5'- cGGCGAgGCGCcGGcCGGAccGUGCGCGCCg -3'
miRNA:   3'- -UUGCUgCGCGuCC-GUCU--CGCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.