miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7017 5' -62 NC_001875.2 + 65182 0.65 0.629204
Target:  5'- uGCCGuucgaCCAGCAGCugGCCaacaauuacguaACGCUGu -3'
miRNA:   3'- gCGGCc----GGUCGUCGugUGGg-----------UGUGGC- -5'
7017 5' -62 NC_001875.2 + 100608 0.66 0.621243
Target:  5'- gCGCCGGCC-GCGGC-CGCUguUugCc -3'
miRNA:   3'- -GCGGCCGGuCGUCGuGUGGguGugGc -5'
7017 5' -62 NC_001875.2 + 88036 0.66 0.621243
Target:  5'- aCGCCcGCgCAGCAGCcaagccagccaACGCCCGCGu-- -3'
miRNA:   3'- -GCGGcCG-GUCGUCG-----------UGUGGGUGUggc -5'
7017 5' -62 NC_001875.2 + 52699 0.66 0.621243
Target:  5'- aCGCCGuggcaaacgaGCCcGCcGCgGCGCCCGcCGCCGa -3'
miRNA:   3'- -GCGGC----------CGGuCGuCG-UGUGGGU-GUGGC- -5'
7017 5' -62 NC_001875.2 + 37158 0.66 0.621243
Target:  5'- uCGCCGGguuCCAGCAcccgugccGCGCGCUgGC-CCa -3'
miRNA:   3'- -GCGGCC---GGUCGU--------CGUGUGGgUGuGGc -5'
7017 5' -62 NC_001875.2 + 61502 0.66 0.621243
Target:  5'- gCGCCGGCuCGGCGccgcaguccGCGUGCUCGCGCUu -3'
miRNA:   3'- -GCGGCCG-GUCGU---------CGUGUGGGUGUGGc -5'
7017 5' -62 NC_001875.2 + 81350 0.66 0.621243
Target:  5'- gCGCUGGU--GCcGCGCGCaCGCGCCGg -3'
miRNA:   3'- -GCGGCCGguCGuCGUGUGgGUGUGGC- -5'
7017 5' -62 NC_001875.2 + 114891 0.66 0.621243
Target:  5'- gCGCUGGUUGGUcacguGGCGCAa-CGCGCCGa -3'
miRNA:   3'- -GCGGCCGGUCG-----UCGUGUggGUGUGGC- -5'
7017 5' -62 NC_001875.2 + 87819 0.66 0.621243
Target:  5'- uGCCGGgCuGCGGUACAgC-ACGCUGg -3'
miRNA:   3'- gCGGCCgGuCGUCGUGUgGgUGUGGC- -5'
7017 5' -62 NC_001875.2 + 124901 0.66 0.621243
Target:  5'- gCGCgGGUUuuguuGUAGCGCGCgguCCACGCCc -3'
miRNA:   3'- -GCGgCCGGu----CGUCGUGUG---GGUGUGGc -5'
7017 5' -62 NC_001875.2 + 74373 0.66 0.621243
Target:  5'- uGCgCGGCC-GCGGCGCGuuCAgGCgCGg -3'
miRNA:   3'- gCG-GCCGGuCGUCGUGUggGUgUG-GC- -5'
7017 5' -62 NC_001875.2 + 29025 0.66 0.620249
Target:  5'- uCG-CGGCCcuugacgAGCAGCACguACUCGCAgCGg -3'
miRNA:   3'- -GCgGCCGG-------UCGUCGUG--UGGGUGUgGC- -5'
7017 5' -62 NC_001875.2 + 92679 0.66 0.620249
Target:  5'- cCGCCGGCCcGCcuCGCGgcCCCAaaauggccaucauCGCCGg -3'
miRNA:   3'- -GCGGCCGGuCGucGUGU--GGGU-------------GUGGC- -5'
7017 5' -62 NC_001875.2 + 59643 0.66 0.619254
Target:  5'- uCGCUGGCUcgugggcuguuugAGCccagcuugcuugaAGCcgaGCCCGCGCCGg -3'
miRNA:   3'- -GCGGCCGG-------------UCG-------------UCGug-UGGGUGUGGC- -5'
7017 5' -62 NC_001875.2 + 110104 0.66 0.612294
Target:  5'- aCGCgCGGCCAG-AGCAagaacgcgcuguggaACCUGCugCGg -3'
miRNA:   3'- -GCG-GCCGGUCgUCGUg--------------UGGGUGugGC- -5'
7017 5' -62 NC_001875.2 + 95343 0.66 0.611301
Target:  5'- uGUCGuaaCCGGCGGCGCACgUGCACgCGu -3'
miRNA:   3'- gCGGCc--GGUCGUCGUGUGgGUGUG-GC- -5'
7017 5' -62 NC_001875.2 + 94618 0.66 0.611301
Target:  5'- aGCgCGG-CAGCGGC-UugCUGCACCGc -3'
miRNA:   3'- gCG-GCCgGUCGUCGuGugGGUGUGGC- -5'
7017 5' -62 NC_001875.2 + 107505 0.66 0.611301
Target:  5'- aGCUGaacGCC-GCGGCACGCUUguugGCGCCGu -3'
miRNA:   3'- gCGGC---CGGuCGUCGUGUGGG----UGUGGC- -5'
7017 5' -62 NC_001875.2 + 3043 0.66 0.611301
Target:  5'- cCGuuGGgCAGCgcguaagaGGCGCGCagcggCGCGCCGg -3'
miRNA:   3'- -GCggCCgGUCG--------UCGUGUGg----GUGUGGC- -5'
7017 5' -62 NC_001875.2 + 62916 0.66 0.610307
Target:  5'- cCGuCCGGCCGGCccucGCACAgCUCGuugacucgacacuCGCCGg -3'
miRNA:   3'- -GC-GGCCGGUCGu---CGUGU-GGGU-------------GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.