miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7018 3' -58.8 NC_001875.2 + 19125 0.66 0.771915
Target:  5'- gCGACGCGccuaccacgGCGGCgccgUCAGCGACa -3'
miRNA:   3'- -GCUGCGCcg-------CGUCGaccaAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 3841 0.66 0.771915
Target:  5'- cCGGCGCGGcCGCAGCcuccaaCAuGUGACg -3'
miRNA:   3'- -GCUGCGCC-GCGUCGaccaa-GU-CGCUG- -5'
7018 3' -58.8 NC_001875.2 + 38296 0.66 0.771915
Target:  5'- aCGACGCGGUgGCgAGCgccgacaaGGc-CGGCGGCa -3'
miRNA:   3'- -GCUGCGCCG-CG-UCGa-------CCaaGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 47906 0.66 0.771915
Target:  5'- -cGCGCGGUGguGCUGccgCAGC-ACg -3'
miRNA:   3'- gcUGCGCCGCguCGACcaaGUCGcUG- -5'
7018 3' -58.8 NC_001875.2 + 108243 0.66 0.771915
Target:  5'- ---gGCGGC-CGGCUGGgcu-GCGGCa -3'
miRNA:   3'- gcugCGCCGcGUCGACCaaguCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 38613 0.66 0.771915
Target:  5'- gGACGCGacaGCuuguaCAGUUGGgaCAGUGACg -3'
miRNA:   3'- gCUGCGC---CGc----GUCGACCaaGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 93194 0.66 0.771915
Target:  5'- aGcACGCGGUaCGGCgag-UCGGCGGCg -3'
miRNA:   3'- gC-UGCGCCGcGUCGaccaAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 97907 0.66 0.771915
Target:  5'- -aACGCGGCGCaAGCUGGgccaccUCAacGUGuCg -3'
miRNA:   3'- gcUGCGCCGCG-UCGACCa-----AGU--CGCuG- -5'
7018 3' -58.8 NC_001875.2 + 5455 0.66 0.768178
Target:  5'- gGACGUGuGCGCAGCcagcuuuccucugcUGGUuuugaacUCGGUGcACa -3'
miRNA:   3'- gCUGCGC-CGCGUCG--------------ACCA-------AGUCGC-UG- -5'
7018 3' -58.8 NC_001875.2 + 40690 0.66 0.762537
Target:  5'- uGACGCGGCGCAuuUGGaaCcGCcGCg -3'
miRNA:   3'- gCUGCGCCGCGUcgACCaaGuCGcUG- -5'
7018 3' -58.8 NC_001875.2 + 83340 0.66 0.762537
Target:  5'- uGACGUGGUGCcGCacgcuacacaUGucgUCGGCGGCg -3'
miRNA:   3'- gCUGCGCCGCGuCG----------ACca-AGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 65759 0.66 0.762537
Target:  5'- uCGGCGUauucGuGCGCGGCgGG--CGGCGGCg -3'
miRNA:   3'- -GCUGCG----C-CGCGUCGaCCaaGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 101081 0.66 0.762537
Target:  5'- uGGCGUgGGCGgAGCUaua-CAGCGACa -3'
miRNA:   3'- gCUGCG-CCGCgUCGAccaaGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 94732 0.66 0.761593
Target:  5'- cCGGCGCGGCGCcGCgcccgCAcacccacGCGGCg -3'
miRNA:   3'- -GCUGCGCCGCGuCGaccaaGU-------CGCUG- -5'
7018 3' -58.8 NC_001875.2 + 75359 0.66 0.760648
Target:  5'- uGGCGuCGGCGUuggugauGGCguUGGUgauggcgUCGGCGAUg -3'
miRNA:   3'- gCUGC-GCCGCG-------UCG--ACCA-------AGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 83003 0.66 0.753046
Target:  5'- uCGAaauaCGGCGuCAGCUGGaccgcgcgCAGCGAg -3'
miRNA:   3'- -GCUgc--GCCGC-GUCGACCaa------GUCGCUg -5'
7018 3' -58.8 NC_001875.2 + 69241 0.66 0.753046
Target:  5'- gCGGCGUcgaacGGCGC-GCUGGgcc-GCGGCu -3'
miRNA:   3'- -GCUGCG-----CCGCGuCGACCaaguCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 27874 0.66 0.752091
Target:  5'- -aACGCGGUauugcggucguucGCcguGCUGGccaUCGGCGACg -3'
miRNA:   3'- gcUGCGCCG-------------CGu--CGACCa--AGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 11614 0.66 0.7473
Target:  5'- gCGGCGUggccacgaauggguuGGCGCGcaucGUUGuGUUCAGCGGa -3'
miRNA:   3'- -GCUGCG---------------CCGCGU----CGAC-CAAGUCGCUg -5'
7018 3' -58.8 NC_001875.2 + 113611 0.66 0.743449
Target:  5'- uCGGCgGCGGgcCGCGGC-GGcaagagCGGCGACg -3'
miRNA:   3'- -GCUG-CGCC--GCGUCGaCCaa----GUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.