miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 3' -56.9 NC_001875.2 + 126277 1.06 0.002858
Target:  5'- aAAACCGCACAGUCGCCGUGACUGGCAc -3'
miRNA:   3'- -UUUGGCGUGUCAGCGGCACUGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 58071 0.71 0.51927
Target:  5'- uGACCGCGCuGUCGgCG-GuCUGGCGc -3'
miRNA:   3'- uUUGGCGUGuCAGCgGCaCuGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 80656 0.71 0.549469
Target:  5'- aGAACCGCGCcGUCGUgGgcaaACUGGCGc -3'
miRNA:   3'- -UUUGGCGUGuCAGCGgCac--UGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 17820 0.7 0.611255
Target:  5'- uGGACCGCGCGGcCGCCaUGcGCgagGGCGc -3'
miRNA:   3'- -UUUGGCGUGUCaGCGGcAC-UGa--CCGU- -5'
7019 3' -56.9 NC_001875.2 + 89159 0.7 0.611255
Target:  5'- -cGCCGCGCGGUU-UCGUGcacGCUGGCGc -3'
miRNA:   3'- uuUGGCGUGUCAGcGGCAC---UGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 83453 0.7 0.611255
Target:  5'- cGAGCCgGCACcuGUCGCCGcgucgGACgGGCGc -3'
miRNA:   3'- -UUUGG-CGUGu-CAGCGGCa----CUGaCCGU- -5'
7019 3' -56.9 NC_001875.2 + 30104 0.7 0.611255
Target:  5'- uGugCGCGCuGUaCGCCGUGAC-GGUg -3'
miRNA:   3'- uUugGCGUGuCA-GCGGCACUGaCCGu -5'
7019 3' -56.9 NC_001875.2 + 37606 0.69 0.632058
Target:  5'- cGGCCGCACGGcggcgugcUCGCCGacgacauggGGCUcGGCAa -3'
miRNA:   3'- uUUGGCGUGUC--------AGCGGCa--------CUGA-CCGU- -5'
7019 3' -56.9 NC_001875.2 + 49522 0.69 0.642464
Target:  5'- cGGACCGCGacCAGUCGCUGgugcugGACUuggGGCc -3'
miRNA:   3'- -UUUGGCGU--GUCAGCGGCa-----CUGA---CCGu -5'
7019 3' -56.9 NC_001875.2 + 122099 0.69 0.652862
Target:  5'- -cAUCGCguacaacgACAGUCGCCG--GCUGGCGu -3'
miRNA:   3'- uuUGGCG--------UGUCAGCGGCacUGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 23815 0.69 0.652862
Target:  5'- -cGCgGCGuCGGgcgCGCCGUGucuCUGGCGg -3'
miRNA:   3'- uuUGgCGU-GUCa--GCGGCACu--GACCGU- -5'
7019 3' -56.9 NC_001875.2 + 26536 0.69 0.673597
Target:  5'- uGAGCUgGCGCuugAGUCGgCGUG-CUGGCAg -3'
miRNA:   3'- -UUUGG-CGUG---UCAGCgGCACuGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 98878 0.69 0.673597
Target:  5'- uAAugUGCGCGGgCGCCGUuucgggaaucGAUUGGCGc -3'
miRNA:   3'- -UUugGCGUGUCaGCGGCA----------CUGACCGU- -5'
7019 3' -56.9 NC_001875.2 + 17164 0.68 0.683916
Target:  5'- cGAAaaGCACGGUCGCCGcUGAC--GCAc -3'
miRNA:   3'- -UUUggCGUGUCAGCGGC-ACUGacCGU- -5'
7019 3' -56.9 NC_001875.2 + 130778 0.68 0.704413
Target:  5'- uGACCGCGCGGUCGCCaacguUGcgcccaacGCUGuGCGc -3'
miRNA:   3'- uUUGGCGUGUCAGCGGc----AC--------UGAC-CGU- -5'
7019 3' -56.9 NC_001875.2 + 36153 0.68 0.708485
Target:  5'- cGAGCCGUAgauugcgcauuaaacCGGUUGCCGUGugUGaCAa -3'
miRNA:   3'- -UUUGGCGU---------------GUCAGCGGCACugACcGU- -5'
7019 3' -56.9 NC_001875.2 + 119750 0.68 0.714572
Target:  5'- -uACCGCcaaAGUCGCCGccggugcgucUGACgGGCGa -3'
miRNA:   3'- uuUGGCGug-UCAGCGGC----------ACUGaCCGU- -5'
7019 3' -56.9 NC_001875.2 + 120421 0.67 0.754383
Target:  5'- gGAAgUGCGCAGUCGCac-GGCggGGCAa -3'
miRNA:   3'- -UUUgGCGUGUCAGCGgcaCUGa-CCGU- -5'
7019 3' -56.9 NC_001875.2 + 10269 0.67 0.764081
Target:  5'- uAACCGCACAuuuGaCGCCGUGG-UGGUc -3'
miRNA:   3'- uUUGGCGUGU---CaGCGGCACUgACCGu -5'
7019 3' -56.9 NC_001875.2 + 50015 0.67 0.773658
Target:  5'- uGGGgCGCGCguGGUCGCCG-GGC-GGCGa -3'
miRNA:   3'- -UUUgGCGUG--UCAGCGGCaCUGaCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.