Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7019 | 3' | -56.9 | NC_001875.2 | + | 10269 | 0.67 | 0.764081 |
Target: 5'- uAACCGCACAuuuGaCGCCGUGG-UGGUc -3' miRNA: 3'- uUUGGCGUGU---CaGCGGCACUgACCGu -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 10396 | 0.66 | 0.819396 |
Target: 5'- -cGCCGC-Cg--CGCCGUGGCgcGGCAc -3' miRNA: 3'- uuUGGCGuGucaGCGGCACUGa-CCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 17164 | 0.68 | 0.683916 |
Target: 5'- cGAAaaGCACGGUCGCCGcUGAC--GCAc -3' miRNA: 3'- -UUUggCGUGUCAGCGGC-ACUGacCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 17820 | 0.7 | 0.611255 |
Target: 5'- uGGACCGCGCGGcCGCCaUGcGCgagGGCGc -3' miRNA: 3'- -UUUGGCGUGUCaGCGGcAC-UGa--CCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 23815 | 0.69 | 0.652862 |
Target: 5'- -cGCgGCGuCGGgcgCGCCGUGucuCUGGCGg -3' miRNA: 3'- uuUGgCGU-GUCa--GCGGCACu--GACCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 26536 | 0.69 | 0.673597 |
Target: 5'- uGAGCUgGCGCuugAGUCGgCGUG-CUGGCAg -3' miRNA: 3'- -UUUGG-CGUG---UCAGCgGCACuGACCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 29276 | 0.66 | 0.828051 |
Target: 5'- cGACCGCgccgGCGGggCGCgGUcGugUGGCGu -3' miRNA: 3'- uUUGGCG----UGUCa-GCGgCA-CugACCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 30104 | 0.7 | 0.611255 |
Target: 5'- uGugCGCGCuGUaCGCCGUGAC-GGUg -3' miRNA: 3'- uUugGCGUGuCA-GCGGCACUGaCCGu -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 33396 | 0.67 | 0.783104 |
Target: 5'- -cAUUGCGCGGUagCGCuCGUGGCUGaGCu -3' miRNA: 3'- uuUGGCGUGUCA--GCG-GCACUGAC-CGu -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 36153 | 0.68 | 0.708485 |
Target: 5'- cGAGCCGUAgauugcgcauuaaacCGGUUGCCGUGugUGaCAa -3' miRNA: 3'- -UUUGGCGU---------------GUCAGCGGCACugACcGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 37606 | 0.69 | 0.632058 |
Target: 5'- cGGCCGCACGGcggcgugcUCGCCGacgacauggGGCUcGGCAa -3' miRNA: 3'- uUUGGCGUGUC--------AGCGGCa--------CUGA-CCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 49522 | 0.69 | 0.642464 |
Target: 5'- cGGACCGCGacCAGUCGCUGgugcugGACUuggGGCc -3' miRNA: 3'- -UUUGGCGU--GUCAGCGGCa-----CUGA---CCGu -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 49929 | 0.66 | 0.835683 |
Target: 5'- gGAGCCGCGCgcgcuaaucagcuGGUCGUCGgaGCUGcGCGc -3' miRNA: 3'- -UUUGGCGUG-------------UCAGCGGCacUGAC-CGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 50015 | 0.67 | 0.773658 |
Target: 5'- uGGGgCGCGCguGGUCGCCG-GGC-GGCGa -3' miRNA: 3'- -UUUgGCGUG--UCAGCGGCaCUGaCCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 58071 | 0.71 | 0.51927 |
Target: 5'- uGACCGCGCuGUCGgCG-GuCUGGCGc -3' miRNA: 3'- uUUGGCGUGuCAGCgGCaCuGACCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 69260 | 0.67 | 0.783104 |
Target: 5'- uGGGCCGCgGCucgaGCCGUGGCggcGGCAa -3' miRNA: 3'- -UUUGGCG-UGucagCGGCACUGa--CCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 70040 | 0.66 | 0.828051 |
Target: 5'- uGAUUGUGCGGUCGCUGcGACggacgGGCc -3' miRNA: 3'- uUUGGCGUGUCAGCGGCaCUGa----CCGu -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 74091 | 0.66 | 0.819396 |
Target: 5'- aAAACC-UGCAGUugggcagcgaCGCCGUG-CUGGCGc -3' miRNA: 3'- -UUUGGcGUGUCA----------GCGGCACuGACCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 80656 | 0.71 | 0.549469 |
Target: 5'- aGAACCGCGCcGUCGUgGgcaaACUGGCGc -3' miRNA: 3'- -UUUGGCGUGuCAGCGgCac--UGACCGU- -5' |
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7019 | 3' | -56.9 | NC_001875.2 | + | 83453 | 0.7 | 0.611255 |
Target: 5'- cGAGCCgGCACcuGUCGCCGcgucgGACgGGCGc -3' miRNA: 3'- -UUUGG-CGUGu-CAGCGGCa----CUGaCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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