miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 5' -60.1 NC_001875.2 + 72628 0.66 0.696923
Target:  5'- gGCGacguaaUCGGCGGCGGCCuGCuGUGu- -3'
miRNA:   3'- gCGCgg----AGUUGCCGCCGGcCG-CAUuu -5'
7019 5' -60.1 NC_001875.2 + 103115 0.66 0.706846
Target:  5'- uCGUGgCUCGcuugGCGGCGGC-GGCGc--- -3'
miRNA:   3'- -GCGCgGAGU----UGCCGCCGgCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 75648 0.66 0.706846
Target:  5'- gGCGUCggCGAUGGCGuuggcGUCGGCGUc-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGC-----CGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 39164 0.66 0.706846
Target:  5'- gGgGCCgCGA-GGCgGGCCGGCGg--- -3'
miRNA:   3'- gCgCGGaGUUgCCG-CCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 9809 0.66 0.703875
Target:  5'- gGCGCCaUCGGCGGCugcuauaaaaaacgGGCgaGGcCGUAGGg -3'
miRNA:   3'- gCGCGG-AGUUGCCG--------------CCGg-CC-GCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 29279 0.66 0.696923
Target:  5'- cCGCGCCggCGGgGcGCGGUCguguGGCGUGu- -3'
miRNA:   3'- -GCGCGGa-GUUgC-CGCCGG----CCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 75594 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75510 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75468 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 89755 0.66 0.696923
Target:  5'- aGUGUUUCGGCaaaauGGUGGUCGGCGa--- -3'
miRNA:   3'- gCGCGGAGUUG-----CCGCCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 26164 0.66 0.656786
Target:  5'- gGCGCggugUGugGGUGGCCGGCa---- -3'
miRNA:   3'- gCGCGga--GUugCCGCCGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 73642 0.66 0.676927
Target:  5'- gGCGgCUgCuGCGGCGGCugCGGCGg--- -3'
miRNA:   3'- gCGCgGA-GuUGCCGCCG--GCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 108244 0.66 0.706846
Target:  5'- aGCGCgUCAACgGGCuGCUGGCc---- -3'
miRNA:   3'- gCGCGgAGUUG-CCGcCGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 54170 0.66 0.676927
Target:  5'- aCGCGCUcggaCAGCGGCGcugcGuuGGCGUc-- -3'
miRNA:   3'- -GCGCGGa---GUUGCCGC----CggCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 9085 0.66 0.66687
Target:  5'- uGCGCCUg--UGGCGaGUCGGCGcUAAAc -3'
miRNA:   3'- gCGCGGAguuGCCGC-CGGCCGC-AUUU- -5'
7019 5' -60.1 NC_001875.2 + 93244 0.66 0.656786
Target:  5'- gCGCuCCUCGACGcGCaGCUGGCccguGUAGAg -3'
miRNA:   3'- -GCGcGGAGUUGC-CGcCGGCCG----CAUUU- -5'
7019 5' -60.1 NC_001875.2 + 75438 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 84308 0.67 0.626451
Target:  5'- gCGCGCCUagUAGCGGCG-CCuGCGg--- -3'
miRNA:   3'- -GCGCGGA--GUUGCCGCcGGcCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 49855 0.67 0.636568
Target:  5'- gCGCGCCggcCGGCGcGCcuuGCCGGCGc--- -3'
miRNA:   3'- -GCGCGGa--GUUGC-CGc--CGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 56304 0.67 0.646683
Target:  5'- gGCGCC-CAagcguaugGCGGUGGCgGGCa---- -3'
miRNA:   3'- gCGCGGaGU--------UGCCGCCGgCCGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.