miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 5' -60.1 NC_001875.2 + 75552 0.66 0.66687
Target:  5'- aGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75438 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75468 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75510 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 113601 0.66 0.656786
Target:  5'- gGCGUUcgagUCGGCGGCGGgCCgcGGCGgcAAg -3'
miRNA:   3'- gCGCGG----AGUUGCCGCC-GG--CCGCauUU- -5'
7019 5' -60.1 NC_001875.2 + 92265 0.66 0.66687
Target:  5'- cCGUGCUgagCAGC-GCGGCCGGgaUGUAGu -3'
miRNA:   3'- -GCGCGGa--GUUGcCGCCGGCC--GCAUUu -5'
7019 5' -60.1 NC_001875.2 + 108902 0.66 0.673913
Target:  5'- aCGCGCCUCAACGcGUuGGUggacgacauuaaagCGGCGc--- -3'
miRNA:   3'- -GCGCGGAGUUGC-CG-CCG--------------GCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 42197 0.66 0.676927
Target:  5'- gGCGUUUCAaauagcgcGCGGCGGCaC-GCGUGGu -3'
miRNA:   3'- gCGCGGAGU--------UGCCGCCG-GcCGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 81336 0.66 0.686947
Target:  5'- uCGUGCCgc-GCGGCGcGCUGGUGc--- -3'
miRNA:   3'- -GCGCGGaguUGCCGC-CGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 75348 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75288 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 26542 0.66 0.686947
Target:  5'- gGCGCUUgAGuCGGCGuGCUGGCa---- -3'
miRNA:   3'- gCGCGGAgUU-GCCGC-CGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 75390 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 39164 0.66 0.706846
Target:  5'- gGgGCCgCGA-GGCgGGCCGGCGg--- -3'
miRNA:   3'- gCgCGGaGUUgCCG-CCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 9809 0.66 0.703875
Target:  5'- gGCGCCaUCGGCGGCugcuauaaaaaacgGGCgaGGcCGUAGGg -3'
miRNA:   3'- gCGCGG-AGUUGCCG--------------CCGg-CC-GCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 9534 0.66 0.706846
Target:  5'- cCGCGCC-CGAUaggacGCGGCUGGUGa--- -3'
miRNA:   3'- -GCGCGGaGUUGc----CGCCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 75648 0.66 0.706846
Target:  5'- gGCGUCggCGAUGGCGuuggcGUCGGCGUc-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGC-----CGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75594 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 29279 0.66 0.696923
Target:  5'- cCGCGCCggCGGgGcGCGGUCguguGGCGUGu- -3'
miRNA:   3'- -GCGCGGa-GUUgC-CGCCGG----CCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 7446 0.66 0.656786
Target:  5'- gCGCGCCggCGAUuGCGGC-GGUGUAc- -3'
miRNA:   3'- -GCGCGGa-GUUGcCGCCGgCCGCAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.