miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 5' -60.1 NC_001875.2 + 126311 1.05 0.001713
Target:  5'- gCGCGCCUCAACGGCGGCCGGCGUAAAc -3'
miRNA:   3'- -GCGCGGAGUUGCCGCCGGCCGCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 6959 0.79 0.118858
Target:  5'- cCGCGCCUCAacacguacuugcaggGCGcaaaGCGGCCGGUGUGGGu -3'
miRNA:   3'- -GCGCGGAGU---------------UGC----CGCCGGCCGCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 66131 0.74 0.254413
Target:  5'- gGCGCCgcccgcggaaCAGUGGuCGGCCGGCGUGAu -3'
miRNA:   3'- gCGCGGa---------GUUGCC-GCCGGCCGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 41457 0.74 0.266689
Target:  5'- gGCGCCgguuGCGGCGcGCgCGGCGUGu- -3'
miRNA:   3'- gCGCGGagu-UGCCGC-CG-GCCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 65752 0.74 0.279439
Target:  5'- gCGgGCCUCGgcguauucgugcGCGGCGGgCGGCGg--- -3'
miRNA:   3'- -GCgCGGAGU------------UGCCGCCgGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 114014 0.74 0.279439
Target:  5'- gGCGcCCUCGcgcAUGGCGGCCGcGCGg--- -3'
miRNA:   3'- gCGC-GGAGU---UGCCGCCGGC-CGCauuu -5'
7019 5' -60.1 NC_001875.2 + 11830 0.74 0.279439
Target:  5'- uCGCGCCggUGGCGG-GGUCGGUGUAAAu -3'
miRNA:   3'- -GCGCGGa-GUUGCCgCCGGCCGCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 123345 0.73 0.29267
Target:  5'- gGCGCC-CAcacggACGGCGcCCGGCGUGGu -3'
miRNA:   3'- gCGCGGaGU-----UGCCGCcGGCCGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 73606 0.73 0.306385
Target:  5'- aGCGCCaacuguugCGGCGGCGGCugCGGCGg--- -3'
miRNA:   3'- gCGCGGa-------GUUGCCGCCG--GCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 98608 0.73 0.320587
Target:  5'- cCGCGCCgaAACGGCGcCCGGCGa--- -3'
miRNA:   3'- -GCGCGGagUUGCCGCcGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 3063 0.72 0.366109
Target:  5'- gGCGCg-CAGCGGCGcGCCGGgGUc-- -3'
miRNA:   3'- gCGCGgaGUUGCCGC-CGGCCgCAuuu -5'
7019 5' -60.1 NC_001875.2 + 59065 0.71 0.374117
Target:  5'- aCGCGUCggcaAACGGUuuGGCCGGCGcgGAAa -3'
miRNA:   3'- -GCGCGGag--UUGCCG--CCGGCCGCa-UUU- -5'
7019 5' -60.1 NC_001875.2 + 55708 0.71 0.374117
Target:  5'- gCGgGCCUCuACGGCcgcgcaaauacGGCCGaGCGUGGc -3'
miRNA:   3'- -GCgCGGAGuUGCCG-----------CCGGC-CGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 66288 0.71 0.390484
Target:  5'- aCGCGCUcugcgUCaAAUGcGCGGCCGGCGa--- -3'
miRNA:   3'- -GCGCGG-----AG-UUGC-CGCCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 91758 0.71 0.398841
Target:  5'- gGCGCgUCAGCGccGCGGCCucgucguagugcGGCGUGu- -3'
miRNA:   3'- gCGCGgAGUUGC--CGCCGG------------CCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 14478 0.71 0.407312
Target:  5'- gGCGCCUCcccGACGGCcaGCCGGCc---- -3'
miRNA:   3'- gCGCGGAG---UUGCCGc-CGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 36340 0.71 0.407312
Target:  5'- uGCGCgUguAC-GCGGCCGGCGgcGAc -3'
miRNA:   3'- gCGCGgAguUGcCGCCGGCCGCauUU- -5'
7019 5' -60.1 NC_001875.2 + 33447 0.71 0.407312
Target:  5'- aGCGCgUUCAGC-GCGGCCGGCcaGUGGu -3'
miRNA:   3'- gCGCG-GAGUUGcCGCCGGCCG--CAUUu -5'
7019 5' -60.1 NC_001875.2 + 19948 0.71 0.407312
Target:  5'- aGCgGCCggcgCGACGGUccGGCCGGCGc--- -3'
miRNA:   3'- gCG-CGGa---GUUGCCG--CCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 57465 0.71 0.415894
Target:  5'- cCGCGCCUgAACGcgccGCGGCCGcGCa---- -3'
miRNA:   3'- -GCGCGGAgUUGC----CGCCGGC-CGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.