miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 5' -60.1 NC_001875.2 + 48 0.69 0.497766
Target:  5'- gGUGCucaaCUCGGCGGCGGC-GGCGa--- -3'
miRNA:   3'- gCGCG----GAGUUGCCGCCGgCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 1396 0.69 0.516949
Target:  5'- gGUGCgUCAGCGGCGcCCuGGUGUGc- -3'
miRNA:   3'- gCGCGgAGUUGCCGCcGG-CCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 1756 0.67 0.636568
Target:  5'- gGUGCCUCAGCGGCGaCCcugcuuuucgGGUGcGAAc -3'
miRNA:   3'- gCGCGGAGUUGCCGCcGG----------CCGCaUUU- -5'
7019 5' -60.1 NC_001875.2 + 3063 0.72 0.366109
Target:  5'- gGCGCg-CAGCGGCGcGCCGGgGUc-- -3'
miRNA:   3'- gCGCGgaGUUGCCGC-CGGCCgCAuuu -5'
7019 5' -60.1 NC_001875.2 + 3190 0.68 0.543298
Target:  5'- cCGCGCaccagagacagguugCGGCGGCGGUuggaUGGCGUGGg -3'
miRNA:   3'- -GCGCGga-------------GUUGCCGCCG----GCCGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 6959 0.79 0.118858
Target:  5'- cCGCGCCUCAacacguacuugcaggGCGcaaaGCGGCCGGUGUGGGu -3'
miRNA:   3'- -GCGCGGAGU---------------UGC----CGCCGGCCGCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 7104 0.67 0.626451
Target:  5'- gCGCGgCUCgGACGGCGGCgaaaCGGCc---- -3'
miRNA:   3'- -GCGCgGAG-UUGCCGCCG----GCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 7446 0.66 0.656786
Target:  5'- gCGCGCCggCGAUuGCGGC-GGUGUAc- -3'
miRNA:   3'- -GCGCGGa-GUUGcCGCCGgCCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 8932 0.68 0.586095
Target:  5'- aCGaCGCUgCAGCaGCGGCCGGcCGUu-- -3'
miRNA:   3'- -GC-GCGGaGUUGcCGCCGGCC-GCAuuu -5'
7019 5' -60.1 NC_001875.2 + 9085 0.66 0.66687
Target:  5'- uGCGCCUg--UGGCGaGUCGGCGcUAAAc -3'
miRNA:   3'- gCGCGGAguuGCCGC-CGGCCGC-AUUU- -5'
7019 5' -60.1 NC_001875.2 + 9534 0.66 0.706846
Target:  5'- cCGCGCC-CGAUaggacGCGGCUGGUGa--- -3'
miRNA:   3'- -GCGCGGaGUUGc----CGCCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 9809 0.66 0.703875
Target:  5'- gGCGCCaUCGGCGGCugcuauaaaaaacgGGCgaGGcCGUAGGg -3'
miRNA:   3'- gCGCGG-AGUUGCCG--------------CCGg-CC-GCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 11830 0.74 0.279439
Target:  5'- uCGCGCCggUGGCGG-GGUCGGUGUAAAu -3'
miRNA:   3'- -GCGCGGa-GUUGCCgCCGGCCGCAUUU- -5'
7019 5' -60.1 NC_001875.2 + 14478 0.71 0.407312
Target:  5'- gGCGCCUCcccGACGGCcaGCCGGCc---- -3'
miRNA:   3'- gCGCGGAG---UUGCCGc-CGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 18078 0.69 0.516949
Target:  5'- gCGCGaCCUCAuuaACGGCGGCUGcuCGUu-- -3'
miRNA:   3'- -GCGC-GGAGU---UGCCGCCGGCc-GCAuuu -5'
7019 5' -60.1 NC_001875.2 + 19948 0.71 0.407312
Target:  5'- aGCgGCCggcgCGACGGUccGGCCGGCGc--- -3'
miRNA:   3'- gCG-CGGa---GUUGCCG--CCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 21572 0.68 0.566084
Target:  5'- cCGCGCgCUCcGCGGCcaGCCGGCc---- -3'
miRNA:   3'- -GCGCG-GAGuUGCCGc-CGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 22737 0.68 0.586095
Target:  5'- cCGCcuauacCCUCAAUGGCGGCCaGCa---- -3'
miRNA:   3'- -GCGc-----GGAGUUGCCGCCGGcCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 26164 0.66 0.656786
Target:  5'- gGCGCggugUGugGGUGGCCGGCa---- -3'
miRNA:   3'- gCGCGga--GUugCCGCCGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 26542 0.66 0.686947
Target:  5'- gGCGCUUgAGuCGGCGuGCUGGCa---- -3'
miRNA:   3'- gCGCGGAgUU-GCCGC-CGGCCGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.