miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 5' -60.1 NC_001875.2 + 84406 0.68 0.580076
Target:  5'- --aGCUUCGGCGGCGGCgcguauaggugccauCGGCGg--- -3'
miRNA:   3'- gcgCGGAGUUGCCGCCG---------------GCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 111058 0.68 0.537402
Target:  5'- uGCGCgUCGACGGCuucuacguggacgacGCCGGCGc--- -3'
miRNA:   3'- gCGCGgAGUUGCCGc--------------CGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 68554 0.68 0.546254
Target:  5'- uGcCGCCgcggCGGCGGCGGUCGcgcaccGCGUGGc -3'
miRNA:   3'- gC-GCGGa---GUUGCCGCCGGC------CGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 128795 0.68 0.546254
Target:  5'- gCGCGCCUCuuACGcGCuGCCcaacGGCGUGu- -3'
miRNA:   3'- -GCGCGGAGu-UGC-CGcCGG----CCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 122118 0.68 0.546254
Target:  5'- aCGUGCCacgcuUCGggcGCGGCgcGGCCGGCGc--- -3'
miRNA:   3'- -GCGCGG-----AGU---UGCCG--CCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 117906 0.68 0.552181
Target:  5'- uGUGCCgacaugucaacaGACGGCaagcugcaGGCCGGCGUGc- -3'
miRNA:   3'- gCGCGGag----------UUGCCG--------CCGGCCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 83598 0.68 0.556144
Target:  5'- gCGCGCCUUAuucACGGUGuuCGGCGc--- -3'
miRNA:   3'- -GCGCGGAGU---UGCCGCcgGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 50027 0.68 0.556144
Target:  5'- gGuCGCCgggCGGCgaGGCGGCCGGCc---- -3'
miRNA:   3'- gC-GCGGa--GUUG--CCGCCGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 54569 0.68 0.566084
Target:  5'- uGCGCC---GCGGCGGCCgcuucgcccGGCGg--- -3'
miRNA:   3'- gCGCGGaguUGCCGCCGG---------CCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 85040 0.68 0.536422
Target:  5'- uGCGCCuccgUCAACuGCGGgCGGCacGUAAAa -3'
miRNA:   3'- gCGCGG----AGUUGcCGCCgGCCG--CAUUU- -5'
7019 5' -60.1 NC_001875.2 + 71138 0.68 0.536422
Target:  5'- gGCgGCCUCAGC-GCGGCC-GCGUu-- -3'
miRNA:   3'- gCG-CGGAGUUGcCGCCGGcCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 47334 0.68 0.534462
Target:  5'- aCGUGCUgUCGGCGGCGGCCaaugaccuaauuGCGUGu- -3'
miRNA:   3'- -GCGCGG-AGUUGCCGCCGGc-----------CGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 65752 0.74 0.279439
Target:  5'- gCGgGCCUCGgcguauucgugcGCGGCGGgCGGCGg--- -3'
miRNA:   3'- -GCgCGGAGU------------UGCCGCCgGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 114014 0.74 0.279439
Target:  5'- gGCGcCCUCGcgcAUGGCGGCCGcGCGg--- -3'
miRNA:   3'- gCGC-GGAGU---UGCCGCCGGC-CGCauuu -5'
7019 5' -60.1 NC_001875.2 + 55708 0.71 0.374117
Target:  5'- gCGgGCCUCuACGGCcgcgcaaauacGGCCGaGCGUGGc -3'
miRNA:   3'- -GCgCGGAGuUGCCG-----------CCGGC-CGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 59065 0.71 0.374117
Target:  5'- aCGCGUCggcaAACGGUuuGGCCGGCGcgGAAa -3'
miRNA:   3'- -GCGCGGag--UUGCCG--CCGGCCGCa-UUU- -5'
7019 5' -60.1 NC_001875.2 + 66288 0.71 0.390484
Target:  5'- aCGCGCUcugcgUCaAAUGcGCGGCCGGCGa--- -3'
miRNA:   3'- -GCGCGG-----AG-UUGC-CGCCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 33447 0.71 0.407312
Target:  5'- aGCGCgUUCAGC-GCGGCCGGCcaGUGGu -3'
miRNA:   3'- gCGCG-GAGUUGcCGCCGGCCG--CAUUu -5'
7019 5' -60.1 NC_001875.2 + 75258 0.7 0.424587
Target:  5'- gGCGUCggCGAUGGCGGC-GGCGUc-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGCCGgCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 48 0.69 0.497766
Target:  5'- gGUGCucaaCUCGGCGGCGGC-GGCGa--- -3'
miRNA:   3'- gCGCG----GAGUUGCCGCCGgCCGCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.