miRNA display CGI


Results 41 - 60 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 92171 0.66 0.862659
Target:  5'- gCAGCucgcCGCCgCGCGCCG-CCGGCC-Ca -3'
miRNA:   3'- gGUUGc---GCGG-GUGCGGUaGGUUGGcG- -5'
7020 5' -57.1 NC_001875.2 + 98226 0.66 0.862659
Target:  5'- cCCGGCG-GCCgACggacugcuGCCcguGUUCAACCGCc -3'
miRNA:   3'- -GGUUGCgCGGgUG--------CGG---UAGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 74313 0.66 0.862659
Target:  5'- aCGGCGCGCagGCGCCGgaCAGCacggGCg -3'
miRNA:   3'- gGUUGCGCGggUGCGGUagGUUGg---CG- -5'
7020 5' -57.1 NC_001875.2 + 58215 0.66 0.862659
Target:  5'- gCAGC-CGCCgCAgcCGCCGcagCCGccGCCGCa -3'
miRNA:   3'- gGUUGcGCGG-GU--GCGGUa--GGU--UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 40708 0.66 0.862659
Target:  5'- aCCGcCGCGCgCGCGUCAUCaacuacaaCGCc -3'
miRNA:   3'- -GGUuGCGCGgGUGCGGUAGguug----GCG- -5'
7020 5' -57.1 NC_001875.2 + 54594 0.66 0.862659
Target:  5'- gCGGCGCGCCCACGgCG-CgGuAUCGg -3'
miRNA:   3'- gGUUGCGCGGGUGCgGUaGgU-UGGCg -5'
7020 5' -57.1 NC_001875.2 + 119473 0.66 0.862659
Target:  5'- aCCGugGCaCCCuCGUCGUCgGGCUugGCg -3'
miRNA:   3'- -GGUugCGcGGGuGCGGUAGgUUGG--CG- -5'
7020 5' -57.1 NC_001875.2 + 98938 0.66 0.862659
Target:  5'- gCguGCGCGaCgCGCGCgUGUUCAGCCGUu -3'
miRNA:   3'- -GguUGCGC-GgGUGCG-GUAGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 75491 0.66 0.862659
Target:  5'- gCAuguCGCGCCUGCGUCGcaggCgCAuACCGCu -3'
miRNA:   3'- gGUu--GCGCGGGUGCGGUa---G-GU-UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 4436 0.66 0.862659
Target:  5'- gCUGACGCGCgCCGCcagcacuuugGCCAggcucugagcgCCGuCCGCg -3'
miRNA:   3'- -GGUUGCGCG-GGUG----------CGGUa----------GGUuGGCG- -5'
7020 5' -57.1 NC_001875.2 + 6649 0.66 0.861906
Target:  5'- -aAACGUGCCCagcacGCGCaAUCUgggcaacGGCCGCu -3'
miRNA:   3'- ggUUGCGCGGG-----UGCGgUAGG-------UUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 39232 0.66 0.860395
Target:  5'- gCCGcuCGCGCCCACcacucugcacagcgGCaaccuUCCGGCgGCa -3'
miRNA:   3'- -GGUu-GCGCGGGUG--------------CGgu---AGGUUGgCG- -5'
7020 5' -57.1 NC_001875.2 + 95944 0.66 0.860395
Target:  5'- aCCGGCGCaUCCaagaguuguACGCCAgcuugcuugaaaugUCCGAgCGCg -3'
miRNA:   3'- -GGUUGCGcGGG---------UGCGGU--------------AGGUUgGCG- -5'
7020 5' -57.1 NC_001875.2 + 47682 0.66 0.855043
Target:  5'- gCGGCGCGCCgCGCGUUucUCAAC-GCg -3'
miRNA:   3'- gGUUGCGCGG-GUGCGGuaGGUUGgCG- -5'
7020 5' -57.1 NC_001875.2 + 11417 0.66 0.855043
Target:  5'- -----uUGCCC-CGCCGUgCGACUGCg -3'
miRNA:   3'- gguugcGCGGGuGCGGUAgGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 42552 0.66 0.855043
Target:  5'- uCCAcggugguCGCGCCCagccGCGCCAggUCGGCgcaCGCg -3'
miRNA:   3'- -GGUu------GCGCGGG----UGCGGUa-GGUUG---GCG- -5'
7020 5' -57.1 NC_001875.2 + 31729 0.66 0.855043
Target:  5'- uUCGGCGaaguugGCCCGCGgCGUuuGAgCGCg -3'
miRNA:   3'- -GGUUGCg-----CGGGUGCgGUAggUUgGCG- -5'
7020 5' -57.1 NC_001875.2 + 90708 0.66 0.855043
Target:  5'- gCCGGCGCGgCC--GCCggUCAAgCGCg -3'
miRNA:   3'- -GGUUGCGCgGGugCGGuaGGUUgGCG- -5'
7020 5' -57.1 NC_001875.2 + 89779 0.66 0.855043
Target:  5'- gCGACGCGCUCGUGCa---CGugCGCg -3'
miRNA:   3'- gGUUGCGCGGGUGCGguagGUugGCG- -5'
7020 5' -57.1 NC_001875.2 + 59912 0.66 0.855043
Target:  5'- -gAGCGCGCggUCaagGCGCUcgCCGACgCGCa -3'
miRNA:   3'- ggUUGCGCG--GG---UGCGGuaGGUUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.