miRNA display CGI


Results 21 - 40 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 5910 0.7 0.640041
Target:  5'- aCAACGCGCuuaaCCGCGgagucgaUUAUCgGACCGCg -3'
miRNA:   3'- gGUUGCGCG----GGUGC-------GGUAGgUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 6194 0.66 0.850378
Target:  5'- gCCcGCGCGCCguuucaaagCGCGCaauugCGUCCGucggcgacacgcccaGCCGCu -3'
miRNA:   3'- -GGuUGCGCGG---------GUGCG-----GUAGGU---------------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 6490 0.77 0.301972
Target:  5'- cCCAACGCGgagugCCGCGCCAacacgCUGGCCGCc -3'
miRNA:   3'- -GGUUGCGCg----GGUGCGGUa----GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 6649 0.66 0.861906
Target:  5'- -aAACGUGCCCagcacGCGCaAUCUgggcaacGGCCGCu -3'
miRNA:   3'- ggUUGCGCGGG-----UGCGgUAGG-------UUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 6693 0.66 0.85427
Target:  5'- aCGACG-GCgCACGCCAUuuguacaCCAugccCCGCc -3'
miRNA:   3'- gGUUGCgCGgGUGCGGUA-------GGUu---GGCG- -5'
7020 5' -57.1 NC_001875.2 + 6840 0.73 0.482745
Target:  5'- aCAACGUGCCCgACGCCAaCUuGCaCGUa -3'
miRNA:   3'- gGUUGCGCGGG-UGCGGUaGGuUG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 7065 0.66 0.877273
Target:  5'- uCCGcUGCGgCgACGCCA-CCGGCCuguGCg -3'
miRNA:   3'- -GGUuGCGCgGgUGCGGUaGGUUGG---CG- -5'
7020 5' -57.1 NC_001875.2 + 7102 0.74 0.419318
Target:  5'- gCAGCGCGCgCugGCCGaCauuGACCGCc -3'
miRNA:   3'- gGUUGCGCGgGugCGGUaGg--UUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 7289 0.68 0.750287
Target:  5'- gCCAAaGCGaCCC-CGCCG-CCGaccccgacucGCCGCa -3'
miRNA:   3'- -GGUUgCGC-GGGuGCGGUaGGU----------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 7585 0.78 0.250508
Target:  5'- aCCAACGCGCCgCcuguCGUCAUUguGCCGCc -3'
miRNA:   3'- -GGUUGCGCGG-Gu---GCGGUAGguUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 7652 0.68 0.769169
Target:  5'- gCCGACGCGCUCua--CAUCCA-CgGCa -3'
miRNA:   3'- -GGUUGCGCGGGugcgGUAGGUuGgCG- -5'
7020 5' -57.1 NC_001875.2 + 8074 0.7 0.660292
Target:  5'- -gAGCGCGUCCGCGUUGUUgucgcgaCGGCCGUa -3'
miRNA:   3'- ggUUGCGCGGGUGCGGUAG-------GUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 8397 0.68 0.778435
Target:  5'- aCC-GCGCGCaaACGCgAUCUGcguaacGCCGCg -3'
miRNA:   3'- -GGuUGCGCGggUGCGgUAGGU------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 8433 0.66 0.870071
Target:  5'- uUCAACGCGaCCCAUGaacaCggCCAAauGCg -3'
miRNA:   3'- -GGUUGCGC-GGGUGCg---GuaGGUUggCG- -5'
7020 5' -57.1 NC_001875.2 + 8476 0.68 0.739724
Target:  5'- aCGuCGCGCggaaacaccacgCCggGCGCCGUCCGugugggcGCCGCg -3'
miRNA:   3'- gGUuGCGCG------------GG--UGCGGUAGGU-------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 8828 0.68 0.740689
Target:  5'- gCGGCGCGCCCAacaccaacUCAUUCAGCUGg -3'
miRNA:   3'- gGUUGCGCGGGUgc------GGUAGGUUGGCg -5'
7020 5' -57.1 NC_001875.2 + 9018 0.66 0.839223
Target:  5'- aCCAAauccgaGUGUgCACGUUggUCGACCGCg -3'
miRNA:   3'- -GGUUg-----CGCGgGUGCGGuaGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 9048 0.76 0.34567
Target:  5'- gCCGGcCGCGCCgguuucCGCGCCGguuuccgCCAACUGCg -3'
miRNA:   3'- -GGUU-GCGCGG------GUGCGGUa------GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 9470 0.69 0.701454
Target:  5'- aCCuuuuACaUGCCuCACGCCA-CCAACgGCg -3'
miRNA:   3'- -GGu---UGcGCGG-GUGCGGUaGGUUGgCG- -5'
7020 5' -57.1 NC_001875.2 + 9600 0.67 0.814127
Target:  5'- cCCAuuCGCGgCCGC-CCuccUCCAGCgGCu -3'
miRNA:   3'- -GGUu-GCGCgGGUGcGGu--AGGUUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.