miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 79 0.69 0.711371
Target:  5'- aCCAAUGaCGCgCCGC-CCgAUCC-GCCGCc -3'
miRNA:   3'- -GGUUGC-GCG-GGUGcGG-UAGGuUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 309 0.8 0.191799
Target:  5'- aCgGGCGCGCuUUGCGCCGcuUCCAGCCGCu -3'
miRNA:   3'- -GgUUGCGCG-GGUGCGGU--AGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 405 0.68 0.759784
Target:  5'- cUCAACGCuuCCgAC-CUGUCCAGCUGCg -3'
miRNA:   3'- -GGUUGCGc-GGgUGcGGUAGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 1105 0.69 0.70046
Target:  5'- cCCAGCGCGCCC-CuCCAuugUUCAacgauaaGCUGCa -3'
miRNA:   3'- -GGUUGCGCGGGuGcGGU---AGGU-------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 1733 0.68 0.769169
Target:  5'- aCCGGuCGCGCCgC-CGCCGccgCCAuuuCCGUc -3'
miRNA:   3'- -GGUU-GCGCGG-GuGCGGUa--GGUu--GGCG- -5'
7020 5' -57.1 NC_001875.2 + 2291 0.74 0.436932
Target:  5'- -uGAUGCGCgCGCGCCGU--GGCCGCg -3'
miRNA:   3'- ggUUGCGCGgGUGCGGUAggUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 3091 0.7 0.671396
Target:  5'- aCGGCGUGCaCGCGCCGgggCgCGGCuCGCg -3'
miRNA:   3'- gGUUGCGCGgGUGCGGUa--G-GUUG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 3392 0.66 0.865648
Target:  5'- -aGGCGCGUCC-UGUuccgauaaggaguugCGUCCGGCUGCg -3'
miRNA:   3'- ggUUGCGCGGGuGCG---------------GUAGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 3666 0.66 0.877273
Target:  5'- gCuGCGCGCUUGCGCg--CCAACCa- -3'
miRNA:   3'- gGuUGCGCGGGUGCGguaGGUUGGcg -5'
7020 5' -57.1 NC_001875.2 + 3840 0.77 0.279811
Target:  5'- gCCGGCGCGgCCGCaGCC-UCCAacaugugacgauccGCCGCa -3'
miRNA:   3'- -GGUUGCGCgGGUG-CGGuAGGU--------------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 4010 0.71 0.610649
Target:  5'- uCCAACGC-CgCGC-CCGUCUGACUGCu -3'
miRNA:   3'- -GGUUGCGcGgGUGcGGUAGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 4077 0.73 0.473392
Target:  5'- gCGACGCGCCCauucuucaACGCCGgaaCAACCu- -3'
miRNA:   3'- gGUUGCGCGGG--------UGCGGUag-GUUGGcg -5'
7020 5' -57.1 NC_001875.2 + 4436 0.66 0.862659
Target:  5'- gCUGACGCGCgCCGCcagcacuuugGCCAggcucugagcgCCGuCCGCg -3'
miRNA:   3'- -GGUUGCGCG-GGUG----------CGGUa----------GGUuGGCG- -5'
7020 5' -57.1 NC_001875.2 + 4570 0.66 0.847229
Target:  5'- gCAACGCgagcaGCCgCAUGCCcgaCAugCGCa -3'
miRNA:   3'- gGUUGCG-----CGG-GUGCGGuagGUugGCG- -5'
7020 5' -57.1 NC_001875.2 + 4799 0.71 0.560379
Target:  5'- aCAGCcgGCGCCCuguCGCCAgcuUCCAaaaACCGg -3'
miRNA:   3'- gGUUG--CGCGGGu--GCGGU---AGGU---UGGCg -5'
7020 5' -57.1 NC_001875.2 + 5205 0.73 0.482745
Target:  5'- uCCAgguuuACGCGCCCgACGCCAcgaucgaCAugCGCc -3'
miRNA:   3'- -GGU-----UGCGCGGG-UGCGGUag-----GUugGCG- -5'
7020 5' -57.1 NC_001875.2 + 5291 0.82 0.149259
Target:  5'- gCCGACGUGCCCGCGCCcgaCGACCa- -3'
miRNA:   3'- -GGUUGCGCGGGUGCGGuagGUUGGcg -5'
7020 5' -57.1 NC_001875.2 + 5510 0.7 0.630915
Target:  5'- aCCGGCGCaCgCGCGCaguuuacgCCGGCCGCc -3'
miRNA:   3'- -GGUUGCGcGgGUGCGgua-----GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 5776 0.73 0.453143
Target:  5'- uUCAGCGCGUCCugGUacggcauuugCCGGCUGCg -3'
miRNA:   3'- -GGUUGCGCGGGugCGgua-------GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 5844 0.76 0.338082
Target:  5'- -gGACGCGCCCGCGUagCAgugcaCCAGCaCGCg -3'
miRNA:   3'- ggUUGCGCGGGUGCG--GUa----GGUUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.