miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 114025 0.76 0.341102
Target:  5'- gCAugGCGgCCGCGCgGUCCAgaugguagcacgcggGCUGCg -3'
miRNA:   3'- gGUugCGCgGGUGCGgUAGGU---------------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 45608 0.77 0.295117
Target:  5'- uCCGGCGCGCagCACuCCAacaCCAGCCGCa -3'
miRNA:   3'- -GGUUGCGCGg-GUGcGGUa--GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 100799 0.77 0.301972
Target:  5'- uCCGACGUacGgCCGCGCCGggUCGGCCGCu -3'
miRNA:   3'- -GGUUGCG--CgGGUGCGGUa-GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 6490 0.77 0.301972
Target:  5'- cCCAACGCGgagugCCGCGCCAacacgCUGGCCGCc -3'
miRNA:   3'- -GGUUGCGCg----GGUGCGGUa----GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 40857 0.76 0.323271
Target:  5'- gCCAagACGCGCaCCgcggGCGCCAUCCugguGCaCGCg -3'
miRNA:   3'- -GGU--UGCGCG-GG----UGCGGUAGGu---UG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 102046 0.76 0.323271
Target:  5'- gCCGGCGUaGCCugaCACGcCCGUCCAcCCGCg -3'
miRNA:   3'- -GGUUGCG-CGG---GUGC-GGUAGGUuGGCG- -5'
7020 5' -57.1 NC_001875.2 + 108683 0.76 0.323271
Target:  5'- gCCGcCGUGCCCGCaGCCGcccUUCGACUGCg -3'
miRNA:   3'- -GGUuGCGCGGGUG-CGGU---AGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 5844 0.76 0.338082
Target:  5'- -gGACGCGCCCGCGUagCAgugcaCCAGCaCGCg -3'
miRNA:   3'- ggUUGCGCGGGUGCG--GUa----GGUUG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 120674 0.76 0.338082
Target:  5'- aCGGCGCGCUgcugUGCGCCAUcgaCCGGCCGUc -3'
miRNA:   3'- gGUUGCGCGG----GUGCGGUA---GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 81345 0.77 0.288383
Target:  5'- gCGGCGCGCuggugCCGCGCgCAcgcgCCGGCCGCg -3'
miRNA:   3'- gGUUGCGCG-----GGUGCG-GUa---GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 20664 0.77 0.287716
Target:  5'- cCCAGCGCGCCCAagaaaauCGCUAagCAgcGCCGUg -3'
miRNA:   3'- -GGUUGCGCGGGU-------GCGGUagGU--UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 66055 0.77 0.285724
Target:  5'- aCC-GCGCGCCgACGCCGcgcgcgugcucgcCCAGCCGCc -3'
miRNA:   3'- -GGuUGCGCGGgUGCGGUa------------GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 5291 0.82 0.149259
Target:  5'- gCCGACGUGCCCGCGCCcgaCGACCa- -3'
miRNA:   3'- -GGUUGCGCGGGUGCGGuagGUUGGcg -5'
7020 5' -57.1 NC_001875.2 + 36829 0.79 0.211611
Target:  5'- gCAguuGCGCGCCCGCGCCAcuaauguauaagUUguACCGCa -3'
miRNA:   3'- gGU---UGCGCGGGUGCGGU------------AGguUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 41807 0.79 0.225961
Target:  5'- gCCGgcacGCGCGCCgGCGCCGcggccaguugcgcgUCCAguuGCCGCg -3'
miRNA:   3'- -GGU----UGCGCGGgUGCGGU--------------AGGU---UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 128755 0.78 0.238827
Target:  5'- cCCGGCGCGUgCACGCCGUgggcgaccCCGgcgcGCCGCu -3'
miRNA:   3'- -GGUUGCGCGgGUGCGGUA--------GGU----UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 37586 0.78 0.250508
Target:  5'- gCCGGCGCGa--GCGCCGcggCCGGCCGCa -3'
miRNA:   3'- -GGUUGCGCgggUGCGGUa--GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 49863 0.78 0.250508
Target:  5'- gCCGGCGCGCCUugccgGCGCCAaCCAaguggucgucgaGCUGCg -3'
miRNA:   3'- -GGUUGCGCGGG-----UGCGGUaGGU------------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 97958 0.78 0.268908
Target:  5'- aCGACGCgGCCaccgaaACGCCGUucugCCGGCCGCg -3'
miRNA:   3'- gGUUGCG-CGGg-----UGCGGUA----GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 3840 0.77 0.279811
Target:  5'- gCCGGCGCGgCCGCaGCC-UCCAacaugugacgauccGCCGCa -3'
miRNA:   3'- -GGUUGCGCgGGUG-CGGuAGGU--------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.